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Cmc03g0071401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0071401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:17650247..17650822
RNA-Seq ExpressionCmc03g0071401
SyntenyCmc03g0071401
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059756.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-8281.15Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        MTPLK WFTTY+ WD GL YMGND A KI GIGSVTLKFKDGTTTLLRNVRHVPSLK NL SLGMLDSIGCEY+ S  +FEI K+SK+VL GTKINGLF 
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        IKEVSMNH  LIVSNDKLT+GDLWH RLS  SGKGLKILSEQ IIPKGVAEKLSF EHCV+GKSTRQ+FQK +HN KDIL+YIHS+LW PS
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-3880.77Show/hide
Query:  GLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSND
        GL YMGNDNACKI GIGSVTLKFKDGT T LRN+RHVPSLKRNL  LGMLDSIGCEY+ SAG+FEI+K+ K+VL GTKINGLFLIKE  MNH  LIVSND
Subjt:  GLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSND

Query:  KLTK
        KLT+
Subjt:  KLTK

TXG72438.1 hypothetical protein EZV62_001017 [Acer yangbiense]1.5e-3946.07Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        MTP K  F T+++ D G   MGND  CK+TGIGSV LK  DG    L +VR++P LKRNL SLG+LDS G  Y+   G  +++K S +V+   K NGL+L
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        +  V++     + +   L K  LWH+RL+H S KGL  LS+Q ++     +KLSF +HCV GK  +  F   +H  + IL+YIHSDLW PS
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

XP_020250324.1 uncharacterized protein LOC109827718 [Asparagus officinalis]6.8e-4042.41Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        M P K WFTTYR+  GG   MGN+  C+  GIG+V +++ D     L ++RH+P LK+NL SL  LDSIGC Y    G   + K S +V+ G+K+N L++
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        ++  ++  +  + S+       LWH RL H S KG+ ILS++ ++       L F EHCV GK TR +F    H  KD L+YIHSDLW P+
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

XP_031741722.1 uncharacterized protein LOC116403917 [Cucumis sativus]4.0e-4074.34Show/hide
Query:  MLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKS
        MLDSIGCEY+DS G+FEI+K+SK+VL   +INGLFLIKEVSMN   LIVSND LT+G+LWHKRLSH SGKGLK+LSEQ I+PKGVAE LSF EHCV+GKS
Subjt:  MLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKS

Query:  TRQNFQKPEHNIK
         RQ+ QK +HN K
Subjt:  TRQNFQKPEHNIK

TrEMBL top hitse value%identityAlignment
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class5.8e-3741.88Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        MTP + + T ++  DGG   +G++  C + G GSV +   DG   +L NVR+VP LKRNL SLG LD  GC  +   G  ++ K S + L GT  +GL++
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        ++  +++ +  I S        LWHKRL+H S +GL+ LS+Q ++      +L F EHC++GKSTR  F K +H  K IL+YIHSDLW P+
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

A0A5A7UZX2 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-8381.15Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        MTPLK WFTTY+ WD GL YMGND A KI GIGSVTLKFKDGTTTLLRNVRHVPSLK NL SLGMLDSIGCEY+ S  +FEI K+SK+VL GTKINGLF 
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        IKEVSMNH  LIVSNDKLT+GDLWH RLS  SGKGLKILSEQ IIPKGVAEKLSF EHCV+GKSTRQ+FQK +HN KDIL+YIHS+LW PS
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

A0A5C7ITL9 CCHC-type domain-containing protein7.3e-4046.07Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        MTP K  F T+++ D G   MGND  CK+TGIGSV LK  DG    L +VR++P LKRNL SLG+LDS G  Y+   G  +++K S +V+   K NGL+L
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        +  V++     + +   L K  LWH+RL+H S KGL  LS+Q ++     +KLSF +HCV GK  +  F   +H  + IL+YIHSDLW PS
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

A0A5D3BAM8 Retrotransposon protein, putative, Ty1-copia subclass1.2e-3743.46Show/hide
Query:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL
        +T  K WF  Y++ +G   YMGN+  C+I GIGSV LK  +    LL+ VRHVP LKRNL SLGMLD +GC      G  ++ +  K++L   K+ GL+ 
Subjt:  MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFL

Query:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS
        +K V      LI   +K  K +LWH+RLSH S KGL  L +Q +I     + L F E C+  KS R  F K EH+ K  L+Y+H DL  P+
Subjt:  IKEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-946.2e-3980.77Show/hide
Query:  GLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSND
        GL YMGNDNACKI GIGSVTLKFKDGT T LRN+RHVPSLKRNL  LGMLDSIGCEY+ SAG+FEI+K+ K+VL GTKINGLFLIKE  MNH  LIVSND
Subjt:  GLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHATLIVSND

Query:  KLTK
        KLT+
Subjt:  KLTK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-2233.86Show/hide
Query:  TPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLI
        TP++  F  Y A D G   MGN +  KI GIG + +K   G T +L++VRHVP L+ NL S   LD  G E   +  K+ + K S ++  G    G    
Subjt:  TPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLI

Query:  KEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRP
            +    L  + D+++  DLWHKR+ H S KGL+IL+++ +I       +   ++C+ GK  R +FQ       +IL+ ++SD+  P
Subjt:  KEVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRP

P93293 Uncharacterized mitochondrial protein AtMg003001.9e-1331.58Show/hide
Query:  SAGKFEIIKNSKMVLVGTKINGLFLIK-EVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEH
        S G  +++K  + +L G + + L++++  V    + L  +    T+  LWH RL+H S +G+++L ++  +       L F E C+ GK+ R NF   +H
Subjt:  SAGKFEIIKNSKMVLVGTKINGLFLIK-EVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEH

Query:  NIKDILEYIHSDLW
          K+ L+Y+HSDLW
Subjt:  NIKDILEYIHSDLW

Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein1.4e-1431.58Show/hide
Query:  SAGKFEIIKNSKMVLVGTKINGLFLIK-EVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEH
        S G  +++K  + +L G + + L++++  V    + L  +    T+  LWH RL+H S +G+++L ++  +       L F E C+ GK+ R NF   +H
Subjt:  SAGKFEIIKNSKMVLVGTKINGLFLIK-EVSMNHATLIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEH

Query:  NIKDILEYIHSDLW
          K+ L+Y+HSDLW
Subjt:  NIKDILEYIHSDLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCATTAAAGGGTTGGTTTACAACATACAGAGCTTGGGATGGAGGCCTAGAATACATGGGAAATGACAATGCTTGTAAAATTACAGGTATTGGTTCTGTTACTCT
TAAATTCAAAGATGGGACAACAACACTTCTTAGGAATGTGAGGCATGTTCCATCCTTGAAAAGAAATTTAAATTCTCTTGGTATGCTAGACTCTATAGGCTGTGAATACA
GAGACTCTGCTGGAAAGTTTGAAATAATTAAAAACTCTAAAATGGTTCTTGTTGGTACTAAAATAAATGGACTCTTTCTTATCAAAGAAGTGTCCATGAATCATGCTACA
TTAATTGTCTCTAATGATAAACTAACTAAAGGAGATTTGTGGCATAAGAGACTTTCTCATACAAGTGGAAAGGGATTAAAAATATTGTCAGAACAGGACATTATTCCTAA
AGGAGTAGCTGAAAAACTCTCTTTCCGTGAGCACTGTGTAATTGGTAAGTCCACAAGGCAAAATTTTCAAAAGCCTGAACACAACATCAAAGACATCCTAGAGTACATCC
ATTCTGACCTATGGAGACCCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACACCATTAAAGGGTTGGTTTACAACATACAGAGCTTGGGATGGAGGCCTAGAATACATGGGAAATGACAATGCTTGTAAAATTACAGGTATTGGTTCTGTTACTCT
TAAATTCAAAGATGGGACAACAACACTTCTTAGGAATGTGAGGCATGTTCCATCCTTGAAAAGAAATTTAAATTCTCTTGGTATGCTAGACTCTATAGGCTGTGAATACA
GAGACTCTGCTGGAAAGTTTGAAATAATTAAAAACTCTAAAATGGTTCTTGTTGGTACTAAAATAAATGGACTCTTTCTTATCAAAGAAGTGTCCATGAATCATGCTACA
TTAATTGTCTCTAATGATAAACTAACTAAAGGAGATTTGTGGCATAAGAGACTTTCTCATACAAGTGGAAAGGGATTAAAAATATTGTCAGAACAGGACATTATTCCTAA
AGGAGTAGCTGAAAAACTCTCTTTCCGTGAGCACTGTGTAATTGGTAAGTCCACAAGGCAAAATTTTCAAAAGCCTGAACACAACATCAAAGACATCCTAGAGTACATCC
ATTCTGACCTATGGAGACCCTCATAA
Protein sequenceShow/hide protein sequence
MTPLKGWFTTYRAWDGGLEYMGNDNACKITGIGSVTLKFKDGTTTLLRNVRHVPSLKRNLNSLGMLDSIGCEYRDSAGKFEIIKNSKMVLVGTKINGLFLIKEVSMNHAT
LIVSNDKLTKGDLWHKRLSHTSGKGLKILSEQDIIPKGVAEKLSFREHCVIGKSTRQNFQKPEHNIKDILEYIHSDLWRPS