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Cmc03g0071561 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0071561
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCMiso1.1chr03:17999725..18002297
RNA-Seq ExpressionCmc03g0071561
SyntenyCmc03g0071561
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97821.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.2e-2892.42Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

XP_011656468.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sativus]9.5e-2992.42Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

XP_016901901.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucumis melo]2.5e-2993.94Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

XP_022994015.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita maxima]2.8e-2583.33Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        +ICGLATHGCGADAL LFH++KI G KPDGITFIGVLCSCTHLGLVEEGTSYFNSMV++YSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

XP_023549948.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita pepo subsp. pepo]4.9e-2581.82Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        +ICGLATHGCGADAL LFH++K+ GEKPDGITFIGVLCSCTHLGLVEEG SYFNSMV++YSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

TrEMBL top hitse value%identityAlignment
A0A0A0KBY4 Uncharacterized protein4.6e-2992.42Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

A0A1S4E0Z4 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like1.2e-2993.94Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

A0A5A7V6Y9 Pentatricopeptide repeat-containing protein1.2e-2993.94Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

A0A5D3BGP3 Pentatricopeptide repeat-containing protein6.0e-2992.42Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MICGLATHGCGADALTLFH++KINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

A0A6J1K037 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like1.4e-2583.33Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        +ICGLATHGCGADAL LFH++KI G KPDGITFIGVLCSCTHLGLVEEGTSYFNSMV++YSI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148204.4e-1353.03Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MI  L+ HG  +DAL+LF R+K    +P+ +TF+GVL  C+H GLVEEG   F SM +EY+ITP L
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic9.9e-1346.88Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP
        MI GLA HGCG +A+ +F++++    KP+G+TF  V C+C+H GLV+E  S F+ M + Y I P
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP

Q9FMA1 Pentatricopeptide repeat-containing protein At5g563109.9e-1348.48Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        +I GLATHG GA+AL +F+R+   G +P+ +TFI +L +C+H+G V+ G   FNSM ++Y I PN+
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

Q9LS72 Pentatricopeptide repeat-containing protein At3g292302.0e-1348.48Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        M+ GL  HG G +A+ LF R++  G +PD +TFI VLCSC H GL++EG  YF SM   Y + P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136001.7e-1251.56Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP
        MI G A +G G +AL LF  +  +GEKPD IT IGVL +C H G VEEG  YF+SM  ++ + P
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP

Arabidopsis top hitse value%identityAlignment
AT1G13410.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.2e-1957.58Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MI GLA HG G +AL LFH +K +G  PD +TF+GVLC+C H+GLVE+G +YFNSM  ++SI P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.0e-1446.88Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP
        MI GLA HGCG +A+ +F++++    KP+G+TF  V C+C+H GLV+E  S F+ M + Y I P
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITP

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-1448.48Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        M+ GL  HG G +A+ LF R++  G +PD +TFI VLCSC H GL++EG  YF SM   Y + P +
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein3.1e-1453.03Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        MI  L+ HG  +DAL+LF R+K    +P+ +TF+GVL  C+H GLVEEG   F SM +EY+ITP L
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL

AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein7.0e-1448.48Show/hide
Query:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL
        +I GLATHG GA+AL +F+R+   G +P+ +TFI +L +C+H+G V+ G   FNSM ++Y I PN+
Subjt:  MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGTGGCTTGGCAACTCATGGATGTGGGGCAGATGCATTAACTTTGTTTCACCGGGTGAAGATCAATGGCGAAAAACCAGATGGAATCACCTTCATTGGGGTGTT
GTGCTCCTGTACCCATCTTGGGTTAGTTGAAGAAGGCACCTCTTATTTCAACTCAATGGTCAATGAATACTCAATTACGCCTAATCTGAGCATTATGGTTGTATGGTTGA
TCTATTTGGCCGAGCAGGTCTTTTGGACCGAGCAATTGATTTTGTGA
mRNA sequenceShow/hide mRNA sequence
GGGTTTAAAGGAAGCATTTATGTTGGAAACACATTGATAGAGAATGCAATGGAAGTTTTTGAAAGCATGGATTTAAAAGATCTGACTCTATGATTTGTGGCTTGGCAACT
CATGGATGTGGGGCAGATGCATTAACTTTGTTTCACCGGGTGAAGATCAATGGCGAAAAACCAGATGGAATCACCTTCATTGGGGTGTTGTGCTCCTGTACCCATCTTGG
GTTAGTTGAAGAAGGCACCTCTTATTTCAACTCAATGGTCAATGAATACTCAATTACGCCTAATCTGAGCATTATGGTTGTATGGTTGATCTATTTGGCCGAGCAGGTCT
TTTGGACCGAGCAATTGATTTTGTGAAGAGGATGCCTATGGAAGCAGATGCTGTCATCTGGGCTGCTCTACTAGGTGCATGCAGGATTTACAAAAACTTATTTTGCTTGA
ACCCAAAAACCCTGCAAACTATGTCTTGCTATCAAATATTTATGGAGATCTTGGTAGATGGAAAGATGTTACACGGTTGAAGATTTTAATGAGGGATACCGAATCCAAAA
AATTGGCGGATGTAGCTTGATTGAGGTGAATGATAGCGTTGTTGAGTTTTATTCCTTGGATGAAAGGAGTAGATCTATGGAGTCTTGAAGGGATTGATGAAATTGTTAAG
ATCATTTGGGTATGAACCAAATATCATGAACTCCAACAGTGATCATGAGAACCACCACATGGAAATGCCTTTTGAGTGTCTGAGATGGTGTCTTATGTAGCTGCAGCTGT
TTCAACTAATATTTAATTTAACCTCAGCTATGTTCATAGTGCCGAACTAATCTAGCTAACTAATATTTATTGATTGCAGTCTTTGAAGCTATTGTTATTTTCAGAAATAA
AACTCTCTCAATCTTTCATTTTGTTTTCACTTTTCTGAATCGTTGTCCAATACATTCTTCCTGGTCATTCTTAAGTTCGTCCTCATTGAACCTCATCTAACTATTTGAGT
TTATCTGATTACTTTTCCTTATTTCATTTTTCTTCTCACACCTAACCTTATTTCATTTTTCTTCTCACACCTAATGTGCAGAGTTTCGATGTTTGATTTTTAATGTTGTT
GGCGCTATGCTTTGCACTAGATGATCATCGGTTGTGTCAATGATGTTGGGAAGAAGCAAGACTTTGCTTCTAGTCTAATTCATCACTACGACAAGAAATTTTGTCTTTGC
CTATTGAAGAGCGGTGAAGAGTTTAATCAGACATACGCTCAAGCATTTGGTGTCAAATGATGTGAAATCTAGCCATCTAGGGCTGAACATCTCTCTCACGAGTGTATAGC
TTTATTGGATTCGCAAAGTGAACCAACTTGAGGTACTTATTTATAGAATTCATGGTTCTGTGTTCTTTTTGATGCACAATCTTCTTCTGTCTACATTCACCTCCCTGCAG
AAATA
Protein sequenceShow/hide protein sequence
MICGLATHGCGADALTLFHRVKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSITPNLSIMVVWLIYLAEQVFWTEQLIL