; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0071661 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0071661
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:18107459..18108214
RNA-Seq ExpressionCmc03g0071661
SyntenyCmc03g0071661
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039148.1 pol protein [Cucumis melo var. makuwa]8.7e-12895.93Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSA LITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSISSDDGLTFEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAL+QRPAGLLQPLNVPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK
         ESVSMDFITELSKTLKGYTVIWVVV RLTKSAHFVPGKS NTA++
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]9.0e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MR RRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQA LLRDFER EIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSIS DDGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT L KTLKGYTVIWVVVDRLTKSAHFV GKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

TYK08868.1 pol protein [Cucumis melo var. makuwa]6.9e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQ  LLRDFER EIAVSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
         QGEDFSISS+DGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT LSKTLKGYTVIWVVVDRLTKSAHFVPGKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

TYK24364.1 putative polyprotein [Cucumis melo var. makuwa]9.0e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MR RRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQA LLRDFER EIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSIS DDGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT L KTLKGYTVIWVVVDRLTKSAHFV GKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

TYK26964.1 pol protein [Cucumis melo var. makuwa]8.7e-12895.93Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSA LITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSISSDDGLTFEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAL+QRPAGLLQPLNVPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK
         ESVSMDFITELSKTLKGYTVIWVVV RLTKSAHFVPGKS NTA++
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK

TrEMBL top hitse value%identityAlignment
A0A5A7T8E0 Pol protein4.2e-12895.93Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSA LITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSISSDDGLTFEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAL+QRPAGLLQPLNVPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK
         ESVSMDFITELSKTLKGYTVIWVVV RLTKSAHFVPGKS NTA++
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK

A0A5A7TDX1 Reverse transcriptase4.4e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MR RRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQA LLRDFER EIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSIS DDGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT L KTLKGYTVIWVVVDRLTKSAHFV GKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

A0A5D3CCF0 Pol protein3.3e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQ  LLRDFER EIAVSVGEVTSQLAQL VQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
         QGEDFSISS+DGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT LSKTLKGYTVIWVVVDRLTKSAHFVPGKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

A0A5D3DL91 Reverse transcriptase4.4e-12592.43Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MR RRWLELVK+YDCEILYHPG ANVVADALSRKVAHSAALITKQA LLRDFER EIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLV+T
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSIS DDGL FEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKA +QRPAGLLQPL+VPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
         ESVSMDFIT L KTLKGYTVIWVVVDRLTKSAHFV GKST TASKWGQLY
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

A0A5D3DTY0 Pol protein4.2e-12895.93Show/hide
Query:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
        MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSA LITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT
Subjt:  MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKT

Query:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK
        GQGEDFSISSDDGLTFEGRL V EDSAVKTELL EAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAL+QRPAGLLQPLNVPGWK
Subjt:  GQGEDFSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWK

Query:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK
         ESVSMDFITELSKTLKGYTVIWVVV RLTKSAHFVPGKS NTA++
Subjt:  SESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.3e-2026.59Show/hide
Query:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG
        R  RW   +++++ EI Y PG+AN +ADALSR       ++ +   + +D E   I        + + Q+S+    + +++    ND  L+    L    
Subjt:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG

Query:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW
        +  + +I   DGL    +  + +  D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW

Query:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
          ES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++
Subjt:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

P0CT35 Transposon Tf2-2 polyprotein6.3e-2026.59Show/hide
Query:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG
        R  RW   +++++ EI Y PG+AN +ADALSR       ++ +   + +D E   I        + + Q+S+    + +++    ND  L+    L    
Subjt:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG

Query:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW
        +  + +I   DGL    +  + +  D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW

Query:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
          ES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++
Subjt:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

P0CT36 Transposon Tf2-3 polyprotein6.3e-2026.59Show/hide
Query:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG
        R  RW   +++++ EI Y PG+AN +ADALSR       ++ +   + +D E   I        + + Q+S+    + +++    ND  L+    L    
Subjt:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG

Query:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW
        +  + +I   DGL    +  + +  D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW

Query:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
          ES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++
Subjt:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

P0CT41 Transposon Tf2-12 polyprotein6.3e-2026.59Show/hide
Query:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG
        R  RW   +++++ EI Y PG+AN +ADALSR       ++ +   + +D E   I        + + Q+S+    + +++    ND  L+    L    
Subjt:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG

Query:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW
        +  + +I   DGL    +  + +  D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW

Query:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
          ES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++
Subjt:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

Q9UR07 Transposon Tf2-11 polyprotein6.3e-2026.59Show/hide
Query:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG
        R  RW   +++++ EI Y PG+AN +ADALSR       ++ +   + +D E   I        + + Q+S+    + +++    ND  L+    L    
Subjt:  RQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTG

Query:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW
        +  + +I   DGL    +  + +  D+ +   ++ + H     +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+     
Subjt:  QGEDFSISSDDGLTFEGR--LFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGW

Query:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY
          ES+SMDFIT L ++  GY  ++VVVDR +K A  VP   + TA +  +++
Subjt:  KSESVSMDFITELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGAGGAGGTGGCTTGAGTTAGTGAAAAACTACGACTGCGAGATCCTGTATCACCCAGGTAATGCAAATGTAGTAGCAGACGCGCTGAGTAGGAAGGTT
GCTCATTCAGCAGCGCTTATCACCAAGCAAGCTCTCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCAGTCTCAGTAGGAGAAGTTACCTCACAGTTGGCTCAG
TTGTCAGTACAGCCGACCCTGAGACAGAGGATTATTGTCGCTCAGTTAAATGATCCTTATTTAGTTGAGAAGCGTCGTTTGGTGAAGACGGGGCAAGGTGAGGAT
TTCTCCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTTTGTGTCGGAAGACAGTGCAGTCAAGACAGAGCTGTTGATTGAGGCTCACAGTTCTCCA
TTTACTATGCACCCTGGAAGTACGAAGATGTATCAGGACTTGAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAGATGTTTG
GTATGCCAGCAGGTGAAGGCACTTAAACAGCGGCCAGCCGGGTTGTTACAACCTTTGAATGTGCCAGGATGGAAATCGGAGAGTGTGTCAATGGACTTCATTACA
GAACTGTCCAAGACCCTAAAGGGCTATACAGTGATCTGGGTTGTTGTCGACAGACTCACGAAGTCAGCGCACTTTGTTCCAGGAAAATCCACTAACACTGCCAGT
AAGTGGGGGCAGCTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGAGGAGGTGGCTTGAGTTAGTGAAAAACTACGACTGCGAGATCCTGTATCACCCAGGTAATGCAAATGTAGTAGCAGACGCGCTGAGTAGGAAGGTT
GCTCATTCAGCAGCGCTTATCACCAAGCAAGCTCTCTTACTCAGAGATTTTGAGAGAGTCGAGATTGCAGTCTCAGTAGGAGAAGTTACCTCACAGTTGGCTCAG
TTGTCAGTACAGCCGACCCTGAGACAGAGGATTATTGTCGCTCAGTTAAATGATCCTTATTTAGTTGAGAAGCGTCGTTTGGTGAAGACGGGGCAAGGTGAGGAT
TTCTCCATATCCTCTGACGATGGCCTTACGTTTGAGGGACGCTTGTTTGTGTCGGAAGACAGTGCAGTCAAGACAGAGCTGTTGATTGAGGCTCACAGTTCTCCA
TTTACTATGCACCCTGGAAGTACGAAGATGTATCAGGACTTGAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAGATGTTTG
GTATGCCAGCAGGTGAAGGCACTTAAACAGCGGCCAGCCGGGTTGTTACAACCTTTGAATGTGCCAGGATGGAAATCGGAGAGTGTGTCAATGGACTTCATTACA
GAACTGTCCAAGACCCTAAAGGGCTATACAGTGATCTGGGTTGTTGTCGACAGACTCACGAAGTCAGCGCACTTTGTTCCAGGAAAATCCACTAACACTGCCAGT
AAGTGGGGGCAGCTATATTGA
Protein sequenceShow/hide protein sequence
MRQRRWLELVKNYDCEILYHPGNANVVADALSRKVAHSAALITKQALLLRDFERVEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVKTGQGED
FSISSDDGLTFEGRLFVSEDSAVKTELLIEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKALKQRPAGLLQPLNVPGWKSESVSMDFIT
ELSKTLKGYTVIWVVVDRLTKSAHFVPGKSTNTASKWGQLY