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Cmc03g0071871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0071871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr03:18548224..18552852
RNA-Seq ExpressionCmc03g0071871
SyntenyCmc03g0071871
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040609.1 DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]4.5e-5065.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GHSGFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA G DSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

KAA0043304.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.9e-5065.16Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D+E++  EVE+D ELQ II+ LK    GK NY+W  G L YKGRLV+ K  +  P    T   + L GH GFL+TYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CEICQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMV+VDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

KAA0049562.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.8e-5267.09Show/hide
Query:  MTTGIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKN
        M  G++D++++ +EVE+D ELQ II+ LK + +GK NY+W  G L YKGRLVL + S+  P    T   + L GHSGFLRTYKRM+ E+HW+GMK DVK 
Subjt:  MTTGIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKN

Query:  YVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        YVE CEICQRNKTEAL+P GLLQPLPIP LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  YVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-5065.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GH GFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

TYK05651.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.0e-5065.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GH GFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

TrEMBL top hitse value%identityAlignment
A0A5A7TH70 DNA polymerase epsilon catalytic subunit2.2e-5065.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GHSGFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA G DSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

A0A5A7TJ13 Retrotransposable element Tf22.9e-5065.16Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D+E++  EVE+D ELQ II+ LK    GK NY+W  G L YKGRLV+ K  +  P    T   + L GH GFL+TYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CEICQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMV+VDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

A0A5A7U1C1 Retrotransposable element Tf21.4e-5267.09Show/hide
Query:  MTTGIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKN
        M  G++D++++ +EVE+D ELQ II+ LK + +GK NY+W  G L YKGRLVL + S+  P    T   + L GHSGFLRTYKRM+ E+HW+GMK DVK 
Subjt:  MTTGIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKN

Query:  YVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        YVE CEICQRNKTEAL+P GLLQPLPIP LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  YVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

A0A5A7VHA7 Ty3/gypsy retrotransposon protein9.9e-5165.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GH GFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

A0A5D3C142 Retrotransposable element Tf29.9e-5165.81Show/hide
Query:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE
        G++D++++  EVE+D ELQ II+ LK +  GK NY+W  G L YKGRLVL + S+  P    T   + L GH GFLRTYKRM+ E+HW+GMK DVK YVE
Subjt:  GIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHP--CSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVE

Query:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
         CE+CQRNKTEAL+P GLLQPLP+P LILEDWTMDFIEGLPKA GYDSIMVVVDR
Subjt:  GCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.5e-1138.1Show/hide
Query:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        H G       + R   W G++  ++ YV+ C  CQ NK+    P G LQP+P  +   E  +MDFI  LP++ GY+++ VVVDR
Subjt:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

P0CT35 Transposon Tf2-2 polyprotein1.5e-1138.1Show/hide
Query:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        H G       + R   W G++  ++ YV+ C  CQ NK+    P G LQP+P  +   E  +MDFI  LP++ GY+++ VVVDR
Subjt:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

P0CT36 Transposon Tf2-3 polyprotein1.5e-1138.1Show/hide
Query:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        H G       + R   W G++  ++ YV+ C  CQ NK+    P G LQP+P  +   E  +MDFI  LP++ GY+++ VVVDR
Subjt:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

P0CT41 Transposon Tf2-12 polyprotein1.5e-1138.1Show/hide
Query:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        H G       + R   W G++  ++ YV+ C  CQ NK+    P G LQP+P  +   E  +MDFI  LP++ GY+++ VVVDR
Subjt:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

Q9UR07 Transposon Tf2-11 polyprotein1.5e-1138.1Show/hide
Query:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR
        H G       + R   W G++  ++ YV+ C  CQ NK+    P G LQP+P  +   E  +MDFI  LP++ GY+++ VVVDR
Subjt:  HSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEICQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACAGGAATAGTTGATGTGGAGATGATCATGAAAGAAGTCGAGGAAGATGGAGAATTGCAGAAAATTATAGACGAATTAAAGAGGGAGCTAAATGGGAAG
CCGAATTACGAATGGATTAAAGGACAATTATGCTATAAAGGAAGGTTGGTATTACCAAAAACTTCCTCATCCCATCCTTGCTCAACACTTATCATCACTAATTTG
AGAGGACACTCAGGTTTTTTGAGAACATATAAAAGAATGAGCAGAGAGCTGCACTGGGTGGGAATGAAAACAGATGTGAAGAATTATGTTGAGGGATGTGAAATC
TGTCAGAGAAATAAAACAGAAGCGCTGTCCCCAACAGGCCTACTGCAACCTTTGCCCATACCCAAGCTGATTTTAGAAGACTGGACCATGGATTTTATTGAAGGA
CTGCCCAAGGCGAGAGGGTATGACTCTATCATGGTGGTGGTAGACCGATAG
mRNA sequenceShow/hide mRNA sequence
GTGATTTTTCTCCACGTACTAGGGTTTCCACGTAGATCTTGGGTTCCTTCTTTGTCACTACTTTCAATATGGTAGTGGGATATCAATGAAACCCCTAGTAGACTT
GACACTTTATGGAACCCGAACAGAGGAGACAGCCACCGGGATCAGCGCCACGGTTCCCGCTATGGTCGATGCTCGGATCAACGTCGCCATGGATGAGTGGTTCCA
CCACCTACAGAGCATGTCGGCCAACCCTTTCCTTCAGTCGCAGCCTTTCGGCGAGTCTCTCCCTCCAGCAGCACGCATTCCGGTCAATACCATCCTTCTGTTGCA
ACCCTCTGGCCAACAAGATACACACGTGCCACCACACCAACCAACAATCCAGCCGCTGTCAAGCCTTCATTCTCTTGCACGCGCTGCCGCCCAATCATGTCCAGC
CACAAACCTCCATCCAGGACACCGCCTCACTGTCGTCTAGTCCAACCGCCACCCACTATTTCTGCTGCAAACCCTAATTATCATCCCACGGTTAAGAATTCTCAA
ATCCACTCAATAATTGAGATTGATGAGTCTACAACATAGTCAAACCCTCACGTGCAGGCTTCCTCTCTGGGAATCGCCTAACAACAATCGAAGTGAAGAGTCCAC
CACGGTTTTTGAAACATTGAAGAGGGCTATGATATTAGTTTCGATTCCGACACTTCCGAATTTCGCCCTTCCCTTTGTGGTTGAAACCGATGCGTCCGAATATGG
ATTGGGGGATGTCCTAACACAGAATTCAAGGTCGATAGCCTTTTTCGGCCAAAAATTATCTCCACGGGCCCAAACTAAGGCAATCTACGAAAGATAACTCATGGT
CGTGGTGTTAGTTGTGCAAAGTGGAGACACTATTTATTGGGCTGAAAATTTACATTGATATTGAATCAAAAGGCACTTAAATTCCTAATCGAGCAAAGGGAAGTC
CAACCTCAATTTCGGAAGTGGTTGACGAAACTTTTGGGGTATGACTCAAAATATTATATCAGCTCAGTCTACAAAATAAGGCAGCGGATGTATTGTCTCGAATAA
ACCAGCCAACTGAAATCATAGTTTTGATGACCACAGGAATAGTTGATGTGGAGATGATCATGAAAGAAGTCGAGGAAGATGGAGAATTGCAGAAAATTATAGACG
AATTAAAGAGGGAGCTAAATGGGAAGCCGAATTACGAATGGATTAAAGGACAATTATGCTATAAAGGAAGGTTGGTATTACCAAAAACTTCCTCATCCCATCCTT
GCTCAACACTTATCATCACTAATTTGAGAGGACACTCAGGTTTTTTGAGAACATATAAAAGAATGAGCAGAGAGCTGCACTGGGTGGGAATGAAAACAGATGTGA
AGAATTATGTTGAGGGATGTGAAATCTGTCAGAGAAATAAAACAGAAGCGCTGTCCCCAACAGGCCTACTGCAACCTTTGCCCATACCCAAGCTGATTTTAGAAG
ACTGGACCATGGATTTTATTGAAGGACTGCCCAAGGCGAGAGGGTATGACTCTATCATGGTGGTGGTAGACCGATAGAGTAAGTTCAGAAATTTCATCTTGTTGA
AACACCCATTCACAGCAAAACAAGTGGAGGAAGCATTCATTGAAAATATTGCAAGTAAACAAGGCATTCCTAAATCAATCGTCACAGATAGAGATAAATTTTTCT
TTAGTAACTTCTGAAAGGAACTATTTACAGCCACGGGGACGATGCTAAAAAGGAGCACAGAATTTCATCCTCAAACGGATGGACAAACCAAGAGAGTAAATAGAT
GCCTCGAGACATATTTAAGATGCTTTTGCAATGAAGAACCAACTAAGTGGAATAAATGAATTCCGTGGGCTGAACTTTGGTACAACACTACATTTCACGCCTCCT
TGAAGACCACTCCATACCAAGTTGTTTATGGTAGACTGTCACCCTTATTCTGTCTTATGGGGAAAAGAAAACCTCCAACAACAGTGTTGCTACAAGTGAGAGACC
GGACCCTTAATGCTTTAAAAGAAAACCTAGCTATTGTTCAAAATCGAATGAAAGGCAAGTCGATCTAACAAGAAGAGATTTGAATTTTCAGCCGGGGGATGAGGT
GTTTGATGGAACTCCTTCTGTGTTTTTGAAGTTGAGACCATACCAGCAAAGATCCTTAGCAAGAAAAGAAATGAGAGAAACTCTGGGCCATACCAAATCACAAAA
AGGATTGGAGAAGTTGCTTATCGTCTGGCATTACCACTAGAAGGTAGCATTCACGATGTTTTCCATACATCACAGTTGAAACTCAAGTTGGGGCATAAGTAGTAG
GTGCAGCATCCATTTCCAGCTCTGACCGAGGAGTTTGAATTACAACTTAAACCAGAATCTGTGTTAGGAATTAGATGGAACGGACAAATCGCAGTAAACGAATGG
CTAGTAAAATGGAAGGGGCTGCCGGATAGTGAGGCAACGTGGGAAAGGGTAACCGAAATGAAGCAGCAGTTTCCGTCCTTCCACCTTGAGGACAAGGTGCAATTC
GAGCCGGGCAGTAATGTGAGACCCCAAATCTGCACACATATAAAAGAAGGTGTAAAATGAGGAATGCCTCATGCCAAGGAGAGAATAATACCTGAGGGCCCACTG
TGAAGGGAGTATAAATAAAGAATGTTTTGGGGAATGGGTTTTTAGGTACTGATTG
Protein sequenceShow/hide protein sequence
MTTGIVDVEMIMKEVEEDGELQKIIDELKRELNGKPNYEWIKGQLCYKGRLVLPKTSSSHPCSTLIITNLRGHSGFLRTYKRMSRELHWVGMKTDVKNYVEGCEI
CQRNKTEALSPTGLLQPLPIPKLILEDWTMDFIEGLPKARGYDSIMVVVDR