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Cmc03g0072121 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0072121
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr03:19015867..19016169
RNA-Seq ExpressionCmc03g0072121
SyntenyCmc03g0072121
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0052923 - all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]1.3e-3776.77Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        +MY + + P LVGYCDADW GSADDRKSTS GCF+LGNNLISW S+KQNCVSLSTAEAEYIAAGS C QL+WMK ML EY  +QD +TLYCDNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

KAA0055610.1 gag-pol polyprotein [Cucumis melo var. makuwa]8.2e-4589.9Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYDTTP LVGYCDADW GSADDRKSTS GCFFLGNNLISWLS+KQNCVSLST EAEYIAAGSGC QLIWMKNML EYGFDQDT+TLYCDN SAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

KAA0056181.1 uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa]4.7e-4085.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYD TPTL GYCDADW GSADDRKSTS GCFFLGNNLIS LS+KQN VSLS AEAEYIAAGSGC QLIWMKNML EY FDQDT+ LYCDNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

TYK03343.1 uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa]4.7e-4085.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYD TPTL GYCDADW GSADDRKSTS GCFFLGNNLIS LS+KQN VSLS AEAEYIAAGSGC QLIWMKNML EY FDQDT+ LYCDNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

TYK23188.1 gag-pol polyprotein [Cucumis melo var. makuwa]8.5e-4285.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYDTTPTLVGYCDADW G ADDRKSTS GCFFLGNNLI WLS+KQNCVSLST EAEYI AGSGC QLIWM+N+L EYGFDQ TITLY DNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

TrEMBL top hitse value%identityAlignment
A0A392MG88 Putative gag-pol polyprotein6.1e-3876.77Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        ++YSY   P+L GYCDADW GSADDRKSTS GCFFLGNNLISW S+KQNCVSLSTAEAEYIAAGS C QL+WMK M+ EY  DQ+ ITLYCDN+SAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

A0A5A7URM6 Reverse transcriptase Ty1/copia-type domain-containing protein2.3e-4085.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYD TPTL GYCDADW GSADDRKSTS GCFFLGNNLIS LS+KQN VSLS AEAEYIAAGSGC QLIWMKNML EY FDQDT+ LYCDNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

A0A5D3BUJ1 Reverse transcriptase Ty1/copia-type domain-containing protein2.3e-4085.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYD TPTL GYCDADW GSADDRKSTS GCFFLGNNLIS LS+KQN VSLS AEAEYIAAGSGC QLIWMKNML EY FDQDT+ LYCDNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

A0A5D3DI97 Gag-pol polyprotein4.1e-4285.86Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYDTTPTLVGYCDADW G ADDRKSTS GCFFLGNNLI WLS+KQNCVSLST EAEYI AGSGC QLIWM+N+L EYGFDQ TITLY DNMSAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

A0A5D3DLL1 Gag-pol polyprotein4.0e-4589.9Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI
        MMYSYDTTP LVGYCDADW GSADDRKSTS GCFFLGNNLISWLS+KQNCVSLST EAEYIAAGSGC QLIWMKNML EYGFDQDT+TLYCDN SAI I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYI

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.3e-1038.46Show/hide
Query:  LVGYCDADWVGSADDRKSTSRGCFFLGN-NLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFD-QDTITLYCDNMSAIYI
        ++GY D+DW GS  DRKST+   F + + NLI W +++QN V+ S+ EAEY+A      + +W+K +L       ++ I +Y DN   I I
Subjt:  LVGYCDADWVGSADDRKSTSRGCFFLGN-NLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFD-QDTITLYCDNMSAIYI

P0CV72 Secreted RxLR effector protein 1616.8e-1043.94Show/hide
Query:  TPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWM
        T  LVGY DADW G  + R+STS   F L    +SW S+KQ  V+LS+ E EY+A      + +W+
Subjt:  TPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1648.31Show/hide
Query:  PTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAI
        P L GY DAD  G  D+RKS++   F      ISW S+ Q CV+LST EAEYIAA     ++IW+K  L E G  Q    +YCD+ SAI
Subjt:  PTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAI

P92519 Uncharacterized mitochondrial protein AtMg008102.2e-0844.07Show/hide
Query:  YCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIW
        +CD+DW G    R+ST+  C FLG N+ISW +++Q  VS S+ E EY A      +L W
Subjt:  YCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIW

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 88.8e-1339Show/hide
Query:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTIT-LYCDNMSAIYI
        + YS      L  + DA +    D R+ST+  C FLG +LISW S+KQ  VS S+AEAEY A      +++W+     E        T L+CDN +AI+I
Subjt:  MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTIT-LYCDNMSAIYI

ATMG00810.1 DNA/RNA polymerases superfamily protein1.6e-0944.07Show/hide
Query:  YCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIW
        +CD+DW G    R+ST+  C FLG N+ISW +++Q  VS S+ E EY A      +L W
Subjt:  YCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGTAGGTTCAGCTGATGATCGTAAAAGTACGTCTAGAGGTTGCTTCTTT
TTGGGAAACAATTTAATCTCTTGGTTAAGTCAGAAGCAAAACTGTGTTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTGTATACAATTG
ATTTGGATGAAAAACATGCTGCTTGAATATGGGTTTGATCAGGATACTATAACGTTGTATTGTGACAATATGAGTGCAATTTATATATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGTAGGTTCAGCTGATGATCGTAAAAGTACGTCTAGAGGTTGCTTCTTT
TTGGGAAACAATTTAATCTCTTGGTTAAGTCAGAAGCAAAACTGTGTTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTGTATACAATTG
ATTTGGATGAAAAACATGCTGCTTGAATATGGGTTTGATCAGGATACTATAACGTTGTATTGTGACAATATGAGTGCAATTTATATATTCTAA
Protein sequenceShow/hide protein sequence
MMYSYDTTPTLVGYCDADWVGSADDRKSTSRGCFFLGNNLISWLSQKQNCVSLSTAEAEYIAAGSGCIQLIWMKNMLLEYGFDQDTITLYCDNMSAIYIF