| GenBank top hits | e value | %identity | Alignment |
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| KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.0e-92 | 90.91 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA MFLKFKAESENQLGKKIKRLRSDRG EYS KTLKEFCESNGIIHEFT PYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| KAA0058501.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-92 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| KAA0063949.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.7e-91 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRL HVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKA+SENQL K+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QNDIAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| TYK07244.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-92 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| TYK23593.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 5.7e-92 | 89.3 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMF+KFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A5A7UFB4 Ty1-copia retrotransposon protein | 9.6e-93 | 90.91 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA MFLKFKAESENQLGKKIKRLRSDRG EYS KTLKEFCESNGIIHEFT PYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| A0A5A7UYD5 Ty1-copia retrotransposon protein | 2.1e-92 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| A0A5A7VEJ0 Ty1-copia retrotransposon protein | 8.1e-92 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRL HVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKA+SENQL K+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QNDIAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| A0A5D3C7N0 Ty1-copia retrotransposon protein | 2.1e-92 | 90.37 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| A0A5D3DJ22 Ty1-copia retrotransposon protein | 2.8e-92 | 89.3 | Show/hide |
Query: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C++SKFHKKPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+
Subjt: MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFI
Query: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
DDYSRFTKIYLIKTKNEA SMF+KFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAERK LK+
Subjt: DDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.6e-20 | 33.14 | Show/hide |
Query: LWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRT--TDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTK
LWH R GH++ + ++K D L+N E C C+ K + PFK ++ +T L ++HSD+ T + KNY+V F+D ++ +
Subjt: LWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRT--TDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTK
Query: IYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER
YLIK K++ SMF F A+SE K+ L D G EY +++FC GI + T P++P+ N ++ER
Subjt: IYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.0e-30 | 38.92 | Show/hide |
Query: SANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIK
S +LWH R+GH++ ++ L LI+ ++ C C+ K H+ F+ R ++L+L++SD+ S GG Y+V+FIDD SR +Y++K
Subjt: SANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIK
Query: TKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER
TK++ +F KF A E + G+K+KRLRSD G EY+ + +E+C S+GI HE T P +P+ N +AER
Subjt: TKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 2.1e-12 | 28.95 | Show/hide |
Query: LWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICV--KSKFHK----------KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYV
L H LGH NF SI+K LK + ES T +CP C+ KS H+ + ++P +Y TD+ +H + +Y++
Subjt: LWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICV--KSKFHK----------KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYV
Query: SFIDDYSRFTKIYLIKTKNEAG--SMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELL
SF D+ +RF +Y + + E ++F A +NQ ++ ++ DRGSEY+ KTL +F + GI +T + + +AER L
Subjt: SFIDDYSRFTKIYLIKTKNEAG--SMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.1e-16 | 32.02 | Show/hide |
Query: ASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDY
AS S+ S+ WH RLGH + + + + L + SH+ C C+ +K +K PF +T LE I+SD+ S YYV F+D +
Subjt: ASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDY
Query: SRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK
+R+T +Y +K K++ F+ FK EN+ +I SD G E+ L E+ +GI H + P++P+ N ++ERK
Subjt: SRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.3e-18 | 32.73 | Show/hide |
Query: WHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKN
WH RLGH + A + + + L + SH+ C C +K HK PF ++ LE I+SD+ S YYV F+D ++R+T +Y +K K+
Subjt: WHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKN
Query: EAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK
+ F+ FK+ EN+ +I L SD G E+ L+++ +GI H + P++P+ N ++ERK
Subjt: EAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK
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