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Cmc03g0073401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0073401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionMyb family transcription factor APL isoform X2
Genome locationCMiso1.1chr03:20910978..20914971
RNA-Seq ExpressionCmc03g0073401
SyntenyCmc03g0073401
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031659.1 myb family transcription factor APL isoform X2 [Cucumis melo var. makuwa]3.6e-4480.49Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN----------STTPLSNPKKIK
        MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNL GDACLVLTSDPKARLRWTAELHERHVDAVTQL GKD   N                  KKIK
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN----------STTPLSNPKKIK

Query:  AKGDFMAMGGSFEKKRMKNEWLN
        AKGDFMAMGGSFEKKRMKNEWL+
Subjt:  AKGDFMAMGGSFEKKRMKNEWLN

TYK04451.1 myb family transcription factor APL isoform X2 [Cucumis melo var. makuwa]4.1e-3293.59Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN
        MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNL GDACLVLTSDPKARLRWTAELHERHVDAVTQL GKD   N
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN

XP_008438355.1 PREDICTED: myb family transcription factor APL isoform X2 [Cucumis melo]1.9e-2977.42Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYSAI ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

XP_038878043.1 protein PHR1-LIKE 2 isoform X1 [Benincasa hispida]1.9e-2977.42Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYSAI ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

XP_038878044.1 protein PHR1-LIKE 2 isoform X2 [Benincasa hispida]1.9e-2977.42Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYSAI ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

TrEMBL top hitse value%identityAlignment
A0A0A0L435 HTH myb-type domain-containing protein1.6e-2976.34Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYS I+ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

A0A1S3AWT2 myb family transcription factor APL isoform X29.3e-3077.42Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYSAI ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

A0A1S3AWU1 myb family transcription factor APL isoform X19.3e-3077.42Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MLSGFSQE A MYSAI ALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPK RLRWTAELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

A0A5A7SQW3 Myb family transcription factor APL isoform X21.7e-4480.49Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN----------STTPLSNPKKIK
        MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNL GDACLVLTSDPKARLRWTAELHERHVDAVTQL GKD   N                  KKIK
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN----------STTPLSNPKKIK

Query:  AKGDFMAMGGSFEKKRMKNEWLN
        AKGDFMAMGGSFEKKRMKNEWL+
Subjt:  AKGDFMAMGGSFEKKRMKNEWLN

A0A5D3BXP8 Myb family transcription factor APL isoform X22.0e-3293.59Show/hide
Query:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN
        MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNL GDACLVLTSDPKARLRWTAELHERHVDAVTQL GKD   N
Subjt:  MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGAN

SwissProt top hitse value%identityAlignment
E5L8F7 Myb family transcription factor IPN21.3e-0960Show/hide
Query:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        GD+ LVLT+DPK RLRWT ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

Q8LAJ7 Protein PHR1-LIKE 36.0e-1861.45Show/hide
Query:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI S+LP+DG  G +    DGTNLP DACLVLT+DPK RLRWT+ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

Q94A57 Protein PHR1-LIKE 21.1e-2265.48Show/hide
Query:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI +LP+DGG  GG + G LDGTNLPGDACLVLT+DPK RLRWT ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

Q9SAK5 Myb family transcription factor APL5.1e-0958.18Show/hide
Query:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        GD+ LVLT+DPK RLRWT ELHER VDAV QLGG D      TP +  + +  KG
Subjt:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

Q9SQQ9 Myb-related protein 21.6e-0758.97Show/hide
Query:  NLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKD
        N PGD+ L+L++D K RL+WT +LHER ++AV QLGG D
Subjt:  NLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKD

Arabidopsis top hitse value%identityAlignment
AT1G79430.2 Homeodomain-like superfamily protein3.6e-1058.18Show/hide
Query:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        GD+ LVLT+DPK RLRWT ELHER VDAV QLGG D      TP +  + +  KG
Subjt:  GDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

AT3G24120.1 Homeodomain-like superfamily protein7.5e-2465.48Show/hide
Query:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI +LP+DGG  GG + G LDGTNLPGDACLVLT+DPK RLRWT ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

AT3G24120.2 Homeodomain-like superfamily protein7.5e-2465.48Show/hide
Query:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI +LP+DGG  GG + G LDGTNLPGDACLVLT+DPK RLRWT ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAISALPMDGG--GGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

AT4G13640.1 Homeodomain-like superfamily protein4.3e-1961.45Show/hide
Query:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI S+LP+DG  G +    DGTNLP DACLVLT+DPK RLRWT+ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG

AT4G13640.2 Homeodomain-like superfamily protein4.3e-1961.45Show/hide
Query:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG
        MYSAI S+LP+DG  G +    DGTNLP DACLVLT+DPK RLRWT+ELHER VDAVTQLGG D      TP +  + +  KG
Subjt:  MYSAI-SALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCTGGGTTTTCACAGGAACTGGCCAGAATGTACTCCGCTATTTCGGCACTGCCGATGGACGGCGGTGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCT
TCCCGGTGATGCTTGTTTGGTTCTCACGTCAGATCCGAAGGCACGCCTCCGTTGGACGGCAGAGCTTCATGAACGACACGTTGACGCTGTCACTCAGCTTGGTGGCAAAG
ACATAGGAGCTAACTCAACAACGCCTTTGTCGAATCCTAAGAAAATCAAGGCCAAGGGAGATTTCATGGCTATGGGAGGAAGTTTTGAGAAAAAGAGAATGAAAAATGAA
TGGTTGAACTCAACCAAGTGA
mRNA sequenceShow/hide mRNA sequence
GAAACCTTCATCTCCTCTTTGAGACGATTCTTCTTCTCCTTCGGCCTCCTTTGATCTCTTTCTGATCTCTCATCTTCTCCGATCACGCATCTTCTCCGATCACGCATCTT
CTCCTTCCGACTTTCATTCACGAAATTTGGACCTCATCTTCTTTTATTCCCCTTTCAAATTTTAGAAACTCGTTGTCATCTCTTCCGTTCTCTCTGTCGCTCTCTTCTGC
TCACCATCTCTCTCTTTCGTTGTCTATCACGCCACGACTGATAGACTGTATACTCGCACACCGACGACCGATAGACTAGTACAAAAACCCTTATCTCCCTTCTTCACACA
AAAACCCTTAACATTTGGTCCTTTGGTTCTTAATTTTTTTTCCACACTCGCCGAAGCAAAAATGTTATCTGGGTTTTCACAGGAACTGGCCAGAATGTACTCCGCTATTT
CGGCACTGCCGATGGACGGCGGTGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGTGATGCTTGTTTGGTTCTCACGTCAGATCCGAAGGCACGCCTC
CGTTGGACGGCAGAGCTTCATGAACGACACGTTGACGCTGTCACTCAGCTTGGTGGCAAAGACATAGGAGCTAACTCAACAACGCCTTTGTCGAATCCTAAGAAAATCAA
GGCCAAGGGAGATTTCATGGCTATGGGAGGAAGTTTTGAGAAAAAGAGAATGAAAAATGAATGGTTGAACTCAACCAAGTGATGAGTTTATTTTGTAGCTTGAACTCAAC
CAAACGTGCCATTTGTTTGCATATATATCGTGCCTGAGACAGAAGATTATTGATATGAGGCTGATGTTATACCTCAAGAAGATCAGATTAAAAATTCTTACAGTTTTTCC
AGAATCCATTGGAGCAGCGAAGCCATATTTGCGGCAATTCATTGATGTATAGGCTTTTTTGTAGGTTTGGTAGGAAAATTTCTGGTTTAAATGTAGTTATTTAAATAGCT
TGTTCGTAACAAATAATATATGTACCAACACTTAAAGCAATATTATAAAGTGTATGTTTCTTTATATATTAAAGTGTTCATCGTTTCTTTCCGTATGTAATTGTATTGGT
CTGTGTAATGGCAGGACAACATGAAA
Protein sequenceShow/hide protein sequence
MLSGFSQELARMYSAISALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKARLRWTAELHERHVDAVTQLGGKDIGANSTTPLSNPKKIKAKGDFMAMGGSFEKKRMKNE
WLNSTK