; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0073731 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0073731
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
Genome locationCMiso1.1chr03:21238271..21239041
RNA-Seq ExpressionCmc03g0073731
SyntenyCmc03g0073731
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33807.1 ty1-copia retrotransposon protein [Cucumis melo subsp. melo]8.9e-13694.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

KAA0043346.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.0e-13594.88Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKT VG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.4e-13594.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSE P SETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

KAA0066784.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.9e-13694.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

TYK07244.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.0e-13795.67Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MFLKFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDK PYEL KGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETPGSET+DTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

TrEMBL top hitse value%identityAlignment
A0A5A7TMS2 Ty1-copia retrotransposon protein9.6e-13694.88Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKT VG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

A0A5A7VHG8 Ty1-copia retrotransposon protein4.3e-13694.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

A0A5D3C7N0 Ty1-copia retrotransposon protein3.9e-13795.67Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MFLKFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDK PYEL KGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETPGSET+DTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

A0A5D3DJE2 Ty1-copia retrotransposon protein1.6e-13594.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFI YAQNSAAYRFMCLNDKTINESRDAEFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSE P SETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

E5GBG5 Ty1-copia retrotransposon protein4.3e-13694.49Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF+KFKA+ ENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML SS LSDNMWGEAVLSACFILNRIPHK
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        RLDKTPYELWKGHAPNLSYLKVWGCLAKVP PALKKTTVG KTFDCIFIEYAQNSAAYRFMCLNDKTINESRD EFFE VFPLKQSLYAPSLSNRMHD E
Subjt:  RLDKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF
        IVSETP SETVDTPNLSCELE +RSKRQRTEKSFGPDFLSTFIVE+RDEIDCNF
Subjt:  IVSETPGSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNF

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.6e-2632.41Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        MF  F AK E     ++  L  D G EY    +++FC   GI +  T P++PQ NG++ER  RT+ E    M+S + L  + WGEAVL+A +++NRIP +
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RL---DKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQN------SAAYRFMCLNDKTINESR----DAEFFEQVFPLKQSL
         L    KTPYE+W    P L +L+V+G    V     K+     K+F  IF+ Y  N      +   +F+   D  ++E+      A  FE VF LK S 
Subjt:  RL---DKTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQN------SAAYRFMCLNDKTINESR----DAEFFEQVFPLKQSL

Query:  YAPSLSNRMHDSEIVSETPGSETVDTPNLSCE---LELRRSKRQRTEKSFGPD
         + +  N  +DS  + +T      + PN S E   ++  +  ++   K+F  D
Subjt:  YAPSLSNRMHDSEIVSETPGSETVDTPNLSCE---LELRRSKRQRTEKSFGPD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-3541.9Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        +F KF A  E + G+++KRLRSD GGEY+ +  +E+C S+GI HE T P +PQ NG+AER NRT+ E + +ML  + L  + WGEAV +AC+++NR P  
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFE
         L  + P  +W     + S+LKV+GC A    P  ++T +  K+  CIFI Y      YR      K +  SRD  F E
Subjt:  RLD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFE

Q12491 Transposon Ty2-B Gag-Pol polyprotein6.6e-0933.33Show/hide
Query:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK
        +F    A  +NQ   R+  ++ DRG EY++KTL +F  + GI   +T     + +G+AER NRTL      +L  S L +++W  AV  +  I N +   
Subjt:  MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHK

Query:  RLDKT
        + DK+
Subjt:  RLDKT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-1930.48Show/hide
Query:  FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKR
        F+ FK   EN+   RI    SD GGE+    L E+   +GI H  + P++P+ NG++ERK+R + E    +LS + +    W  A   A +++NR+P   
Subjt:  FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKR

Query:  LD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSL
        L  ++P++   G +PN   L+V+GC          +  +  K+  C+F+ Y+   +AY  + L    +  SR   F E  FP    L
Subjt:  LD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.5e-2129.63Show/hide
Query:  FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKR
        F+ FK+  EN+   RI  L SD GGE+    L+++   +GI H  + P++P+ NG++ERK+R + EM   +LS + +    W  A   A +++NR+P   
Subjt:  FLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKR

Query:  LD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE
        L  ++P++   G  PN   LKV+GC          +  +  K+  C F+ Y+   +AY  + +    +  SR  +F E+ FP   + +  S S     S+
Subjt:  LD-KTPYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSE

Query:  IVSETPGSETVDTPNL
             P   T+ T  L
Subjt:  IVSETPGSETVDTPNL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTAAAATTCAAGGCAAAACCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACGCTTAAAGAA
TTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAAT
GCCATGTTATCAAGCTCCGACCTATCTGATAATATGTGGGGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACT
CCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAAACTACGGTAGGA
TCTAAAACCTTTGACTGCATTTTTATCGAGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGATGCAGAA
TTCTTTGAGCAGGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAACAGAATGCATGATTCTGAAATCGTTAGTGAAACACCTGGTTCTGAAACT
GTTGATACTCCAAACCTAAGTTGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAA
AAGCGTGATGAAATTGACTGTAACTTCATAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTAAAATTCAAGGCAAAACCTGAGAATCAGTTAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCCGATAAAACGCTTAAAGAA
TTTTGTGAATCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAATAGAACTCTTAAAGAAATGATGAAT
GCCATGTTATCAAGCTCCGACCTATCTGATAATATGTGGGGGGAAGCCGTGTTGTCTGCATGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACT
CCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTAAAGGTTTGGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGAAGAAAACTACGGTAGGA
TCTAAAACCTTTGACTGCATTTTTATCGAGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATGACAAAACTATAAACGAATCTAGAGATGCAGAA
TTCTTTGAGCAGGTTTTTCCGTTAAAACAATCATTGTATGCTCCTAGCCTATCTAACAGAATGCATGATTCTGAAATCGTTAGTGAAACACCTGGTTCTGAAACT
GTTGATACTCCAAACCTAAGTTGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACCTTCATAGTGGAA
AAGCGTGATGAAATTGACTGTAACTTCATAAGATGA
Protein sequenceShow/hide protein sequence
MFLKFKAKPENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLSSSDLSDNMWGEAVLSACFILNRIPHKRLDKT
PYELWKGHAPNLSYLKVWGCLAKVPFPALKKTTVGSKTFDCIFIEYAQNSAAYRFMCLNDKTINESRDAEFFEQVFPLKQSLYAPSLSNRMHDSEIVSETPGSET
VDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVEKRDEIDCNFIR