CuGenDBv2

Gene ID	Cmc03g0074681
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CCHC-type domain-containing protein
Genome location	CMiso1.1chr03:22128726..22142109
RNA-Seq Expression	Cmc03g0074681
Synteny	Cmc03g0074681
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037490.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]

1.3e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQRVGSQTV Q RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

KAA0037806.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.9e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.4e-22

96.77

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

TYK01965.1 hypothetical protein E5676_scaffold808G00660 [Cucumis melo var. makuwa]

1.3e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQRVGSQTV Q RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

TYK09349.1 RVP_2 domain-containing protein [Cucumis melo var. makuwa]

2.9e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T292 Retrotransposon protein, putative, Ty3-gypsy subclass

6.2e-22

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQRVGSQTV Q RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

A0A5A7TKI0 DNA/RNA polymerases superfamily protein

1.4e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

A0A5A7V0R0 Reverse transcriptase

2.1e-22

96.77

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

A0A5A7VD61 Reverse transcriptase

1.4e-21

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQ VGSQTVEQ RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

A0A5D3BS00 Integrase catalytic domain-containing protein

6.2e-22

95.16

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Query:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG
        MTVQRDQRVGSQTV Q RVSVVPTEGTSGARQK VVGRPRQQGKVYAMTQQEAEDAPDVITG
Subjt:  MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAGTTCAGAGAGATCAGAGAGTTGGGTCCCAGACAGTTGAGCAATGGAGAGTTTCAGTGGTTCCAACAGAGGGCACCAGTGGTGCAAGGCAAAAGGTAGTT
GTTGGAAGACCGAGGCAACAGGGAAAAGTCTATGCTATGACTCAACAAGAAGCAGAGGACGCACCAGACGTTATTACTGGTAAGGGCACAGCGAGGGGCAGACCG
ACGAGAGGCAGGAAGGATGCGTGA

mRNA sequence

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CATTTCAAGAAATATTGTCCGCAGTTGAACATGACAGTTCAGAGAGATCAGAGAGTTGGGTCCCAGACAGTTGAGCAATGGAGAGTTTCAGTGGTTCCAACAGAG
GGCACCAGTGGTGCAAGGCAAAAGGTAGTTGTTGGAAGACCGAGGCAACAGGGAAAAGTCTATGCTATGACTCAACAAGAAGCAGAGGACGCACCAGACGTTATT
ACTGGTAAGGGCACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTG

Protein sequence

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MTVQRDQRVGSQTVEQWRVSVVPTEGTSGARQKVVVGRPRQQGKVYAMTQQEAEDAPDVITGKGTARGRPTRGRKDA

Cmc03g0074681 (gene) of Melon (Charmono) v1.1 genome