; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc03g0074801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0074801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr03:22244354..22244899
RNA-Seq ExpressionCmc03g0074801
SyntenyCmc03g0074801
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041424.1 pol protein [Cucumis melo var. makuwa]1.0e-7782.76Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATIGM PFEALY KCC  PVCWDE+ EQRLM  +LVQSTNEA+
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILER+ P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

KAA0043669.1 pol protein [Cucumis melo var. makuwa]2.7e-7883.33Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFPDSWDSHLHLMEFAYNNS+QATIGM PFEALY +CC  PVCWDE+ EQRLM  +LVQSTNEA+
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

KAA0045277.1 pol protein [Cucumis melo var. makuwa]1.7e-7783.91Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNSFQATIGM PFEALY KCC  PVCW E+ EQRLM  +LVQSTNEAI
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS MQTA SRQKSYA+VR+KD EF+VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

KAA0057119.1 pol protein [Cucumis melo var. makuwa]5.7e-8993.14Show/hide
Query:  FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSL
        FDT FHPQADGQTEHLNQVLEDML+ACALE P SWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCG PVCWDE+ EQRLM  KLVQSTNEAIQKIRSL
Subjt:  FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSL

Query:  MQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
        MQ AHSRQKSYANVRRK+FEFNVGDKVFLKVAPMKGI RFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
Subjt:  MQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS

KAA0063786.1 pol protein [Cucumis melo var. makuwa]1.3e-7782.76Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAF+PQ D QTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATIGM PFEALY KCC FPVCW E+ EQRLMC +LVQSTNEAI
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPM+G+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

TrEMBL top hitse value%identityAlignment
A0A5A7TDB5 Pol protein4.9e-7882.76Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATIGM PFEALY KCC  PVCWDE+ EQRLM  +LVQSTNEA+
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILER+ P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

A0A5A7TR61 Pol protein1.3e-7883.33Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFPDSWDSHLHLMEFAYNNS+QATIGM PFEALY +CC  PVCWDE+ EQRLM  +LVQSTNEA+
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

A0A5A7TTW5 Pol protein8.4e-7883.91Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAFHPQ DGQTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNSFQATIGM PFEALY KCC  PVCW E+ EQRLM  +LVQSTNEAI
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS MQTA SRQKSYA+VR+KD EF+VGDKVFLKVAPMKG+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

A0A5A7UUA0 Pol protein2.8e-8993.14Show/hide
Query:  FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSL
        FDT FHPQADGQTEHLNQVLEDML+ACALE P SWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCG PVCWDE+ EQRLM  KLVQSTNEAIQKIRSL
Subjt:  FDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSL

Query:  MQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
        MQ AHSRQKSYANVRRK+FEFNVGDKVFLKVAPMKGI RFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS
Subjt:  MQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS

A0A5A7VBI2 Pol protein6.4e-7882.76Show/hide
Query:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI
        MGTRLDF TAF+PQ D QTE LNQVLEDML+ACALEFP SWDSHLHLMEFAYNNS+QATIGM PFEALY KCC FPVCW E+ EQRLMC +LVQSTNEAI
Subjt:  MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAI

Query:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA
        QKIRS M TA SRQKSYA+VRRKD EF VGDKVFLKVAPM+G+ RFERRG LSP FVGPFEILERI P+AY LA
Subjt:  QKIRSLMQTAHSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLA

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein8.8e-1628.57Show/hide
Query:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA
        + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTPFE ++           P   D+ DE         Q T + 
Subjt:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA

Query:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL
         Q ++  + T + + K Y +++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Subjt:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL

P0CT35 Transposon Tf2-2 polyprotein8.8e-1628.57Show/hide
Query:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA
        + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTPFE ++           P   D+ DE         Q T + 
Subjt:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA

Query:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL
         Q ++  + T + + K Y +++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Subjt:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL

P0CT36 Transposon Tf2-3 polyprotein8.8e-1628.57Show/hide
Query:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA
        + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTPFE ++           P   D+ DE         Q T + 
Subjt:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA

Query:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL
         Q ++  + T + + K Y +++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Subjt:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL

P0CT41 Transposon Tf2-12 polyprotein8.8e-1628.57Show/hide
Query:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA
        + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTPFE ++           P   D+ DE         Q T + 
Subjt:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA

Query:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL
         Q ++  + T + + K Y +++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Subjt:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL

Q9UR07 Transposon Tf2-11 polyprotein8.8e-1628.57Show/hide
Query:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA
        + F   + PQ DGQTE  NQ +E +L+      P++W  H+ L++ +YNN+  +   MTPFE ++           P   D+ DE         Q T + 
Subjt:  LDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYD-----KCCGFPVCWDEIDEQRLMCSKLVQSTNEA

Query:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL
         Q ++  + T + + K Y +++ ++  EF  GD V +K      + +  +   L+P F GPF +L++  P  Y L
Subjt:  IQKIRSLMQTAHSRQKSYANVRRKDF-EFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCACGAGGTTAGACTTTGATACAGCTTTCCACCCACAGGCTGATGGTCAGACTGAGCATTTGAACCAAGTTTTAGAGGATATGTTGCAAGCTTGTGCATTAGAATT
CCCAGATAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAACAACAGTTTTCAGGCTACCATTGGCATGACACCGTTTGAGGCCTTGTATGACAAATGTTGTG
GATTCCCTGTTTGCTGGGATGAGATTGATGAGCAGAGATTGATGTGTTCTAAGTTAGTTCAATCTACTAATGAAGCGATACAGAAAATTAGATCCCTTATGCAGACCGCA
CATAGTAGACAAAAGAGTTATGCTAATGTGAGACGAAAGGACTTTGAGTTTAATGTGGGGGATAAAGTGTTCTTGAAAGTTGCACCTATGAAAGGTATCCAACGATTTGA
AAGGAGAGGAAATCTGAGTCCCTGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGCCCCTATGGCATATCCCTTGGCCGCCATCACTCTCGGTAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCACGAGGTTAGACTTTGATACAGCTTTCCACCCACAGGCTGATGGTCAGACTGAGCATTTGAACCAAGTTTTAGAGGATATGTTGCAAGCTTGTGCATTAGAATT
CCCAGATAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAACAACAGTTTTCAGGCTACCATTGGCATGACACCGTTTGAGGCCTTGTATGACAAATGTTGTG
GATTCCCTGTTTGCTGGGATGAGATTGATGAGCAGAGATTGATGTGTTCTAAGTTAGTTCAATCTACTAATGAAGCGATACAGAAAATTAGATCCCTTATGCAGACCGCA
CATAGTAGACAAAAGAGTTATGCTAATGTGAGACGAAAGGACTTTGAGTTTAATGTGGGGGATAAAGTGTTCTTGAAAGTTGCACCTATGAAAGGTATCCAACGATTTGA
AAGGAGAGGAAATCTGAGTCCCTGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGCCCCTATGGCATATCCCTTGGCCGCCATCACTCTCGGTAGTTCATGA
Protein sequenceShow/hide protein sequence
MGTRLDFDTAFHPQADGQTEHLNQVLEDMLQACALEFPDSWDSHLHLMEFAYNNSFQATIGMTPFEALYDKCCGFPVCWDEIDEQRLMCSKLVQSTNEAIQKIRSLMQTA
HSRQKSYANVRRKDFEFNVGDKVFLKVAPMKGIQRFERRGNLSPCFVGPFEILERIAPMAYPLAAITLGSS