CuGenDBv2

Gene ID	Cmc03g0074871
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr03:22302867..22303622
RNA-Seq Expression	Cmc03g0074871
Synteny	Cmc03g0074871
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.3e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.3e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.3e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.3e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.3e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

1.6e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

A0A5A7T3K4 Reverse transcriptase

1.6e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

A0A5A7U2V7 Reverse transcriptase

1.6e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

A0A5A7UUL6 Reverse transcriptase

1.6e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

A0A5D3BHI1 Reverse transcriptase

1.6e-135

95.22

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLY KFSKCEFWLEQVVFLGHVV AKGV+VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ER  SATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKN KFEWSDKCEQSFQELKKRLVT+PILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD
        S QLKEHECNYPTHDLELAAVVLALKIWRHYLFG+KCHIFTDHKSLKYIFD
Subjt:  SSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.1e-51

39.84

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FLGHV+   G+  +P+K+EA+  +
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSD-KCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAY
           T   E+++FLGL GYYR+FI +F+ +A P+T   +KN K + ++ + + +F++LK  +   PIL +P   K + +  DAS + LG VL QDG+ ++Y
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSD-KCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAY

Query:  ASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIF
         S  L EHE NY T + EL A+V A K +RHYL G+   I +DH+ L +++
Subjt:  ASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIF

P10394 Retrovirus-related Pol polyprotein from transposon 412

4.3e-37

33.86

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        +PFGL  AP  F  +M   F         +++DD++V     +   ++L  V    R+  L     KC F++ +V FLGH    KG+  D +K + + N+
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGN----V
             A   R F+    YYRRFI++F+  +  +T L +KN  FEW+D+C+++F  LK +L+   +L  P   K++ I  DAS+   G VL Q+ N     
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGN----V

Query:  IAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIF
        +AYAS    + E N  T + ELAA+  A+  +R Y++GK   + TDH+ L Y+F
Subjt:  IAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYIF

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

5.1e-38

34.1

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        +PFGL NA ++F   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  +     K  F+ E V +LG +V   G   DP+KV+A+  +
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR-----------KNAKFEWSDKCEQSFQELKKRLVTSP-ILALPVTGKDYVIYCDASRLGLGC
               +VRSFLGLA YYR FI+DF+ +A P+T + +           K    E+++    +FQ L+  L +   IL  P   K + +  DAS  G+G 
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR-----------KNAKFEWSDKCEQSFQELKKRLVTSP-ILALPVTGKDYVIYCDASRLGLGC

Query:  VLMQDGNVIAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFG-KKCHIFTDHKSLKY
        VL Q+G  I   S  LK+ E NY T++ EL A+V AL   +++L+G ++ +IFTDH+ L +
Subjt:  VLMQDGNVIAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFG-KKCHIFTDHKSLKY

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.2e-50

40.24

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        MPFGL NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V   G+  +P KV+A+V++
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCE--QSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIA
           T   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+  DAS L LG VL Q+G+ I+
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCE--QSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIA

Query:  YASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYI
        + S  L +HE NY   + EL A+V A K +RHYL G++  I +DH+ L+++
Subjt:  YASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGKKCHIFTDHKSLKYI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

4.0e-43

39.02

Show/hide

Query:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW
        +PFGL NAPA+F  +++ I  +++ +   V+IDDI+V+S D ++H ++LR+VL +L    L     K  F   QV FLG++V A G+  DP+KV A+   
Subjt:  MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNW

Query:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCV
           TS  E++ FLG+  YYR+FI+D++++A PLT LTR    N K   S K          QSF +LK  L +S ILA P   K + +  DAS   +G V
Subjt:  ERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCV

Query:  LMQD----GNVIAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGK-KCHIFTDHKSLKY
        L QD       IAY S  L + E NY T + E+ A++ +L   R YL+G     ++TDH+ L +
Subjt:  LMQD----GNVIAYASSQLKEHECNYPTHDLELAAVVLALKIWRHYLFGK-KCHIFTDHKSLKY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.5e-24

41.94

Show/hide

Query:  HLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLG--HVVLAKGVNVDPQKVEAVVNWERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEW
        HL +VLQ     Q Y    KC F   Q+ +LG  H++  +GV+ DP K+EA+V W    + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLG--HVVLAKGVNVDPQKVEAVVNWERLTSATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEW

Query:  SDKCEQSFQELKKRLVTSPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQELKKRLVTSPILALP

Sequences

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CDS sequence

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ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGT
TTACTCGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGATAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGGCATGTAGTTTTAGCAAAAGGAGTTAATGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACTAACTAGTGCGACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCAATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAAGTTTTCAAGAATTGAAGAAAAGACTAGTGACATCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGC
TAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGCCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCA
GTTGTTTTAGCACTAAAAATCTGGAGACACTATTTGTTCGGGAAAAAGTGCCATATTTTCACAGATCATAAAAGTCTAAAGTATATTTTTGATTAG

mRNA sequence

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Protein sequence

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MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYDKFSKCEFWLEQVVFLGHVVLAKGVNVDPQKVEAVVNWERLTSATEVR
SFLGLAGYYRRFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTSPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASSQLKEHECNYPTHDLELAA
VVLALKIWRHYLFGKKCHIFTDHKSLKYIFD

Cmc03g0074871 (gene) of Melon (Charmono) v1.1 genome