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Cmc03g0075861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0075861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionU4/U6 small nuclear ribonucleoprotein PRP4-like protein
Genome locationCMiso1.1chr03:23153009..23156941
RNA-Seq ExpressionCmc03g0075861
SyntenyCmc03g0075861
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0017070 - U6 snRNA binding (molecular function)
GO:0030621 - U4 snRNA binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036444.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuwa]4.1e-44100Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

XP_004146749.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus]2.1e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

XP_008464716.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo]2.1e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

XP_022999661.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucurbita maxima]2.1e-4092.13Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNL+SQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

XP_038885479.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida]2.1e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

TrEMBL top hitse value%identityAlignment
A0A0A0KHD8 WD_REPEATS_REGION domain-containing protein1.0e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

A0A1S4E4U8 U4/U6 small nuclear ribonucleoprotein PRP4-like protein1.0e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

A0A5A7SYS7 U4/U6 small nuclear ribonucleoprotein PRP4-like protein2.0e-44100Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

A0A5A7TI50 U4/U6 small nuclear ribonucleoprotein PRP4-like protein1.0e-4094.32Show/hide
Query:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

A0A6J1KDQ7 U4/U6 small nuclear ribonucleoprotein PRP4-like protein1.0e-4092.13Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNL+SQVKYEPQEGYFLVTASFDM AKIWSARD KPVK+LSGHEAKVTSLDIIS
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

SwissProt top hitse value%identityAlignment
O22212 U4/U6 small nuclear ribonucleoprotein PRP4-like protein6.2e-3576.4Show/hide
Query:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI
        S +FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH+NLVSQVKYEPQEGYFL TAS+DM   IWS RD   VKSL+GHE+KV SLDI
Subjt:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI

O43172 U4/U6 small nuclear ribonucleoprotein Prp41.2e-2556.18Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  AKIW+     P+K+L+GHE KV  LDI S
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

Q3MHE2 U4/U6 small nuclear ribonucleoprotein Prp41.2e-2556.18Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  AKIW+     P+K+L+GHE KV  LDI S
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

Q5NVD0 U4/U6 small nuclear ribonucleoprotein Prp41.2e-2556.18Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  AKIW+     P+K+L+GHE KV  LDI S
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

Q9DAW6 U4/U6 small nuclear ribonucleoprotein Prp41.5e-2556.18Show/hide
Query:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS
        +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  AKIW+     P+K+L+GHE KV  LDI S
Subjt:  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIIS

Arabidopsis top hitse value%identityAlignment
AT1G61210.1 Transducin/WD40 repeat-like superfamily protein1.9e-1030.39Show/hide
Query:  ELVEVFLPWKATSS--HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTS
        ++V  F   ++  S   F P G  LA+G  D   +IWD+RKK  +     HS  +S +++ P +G ++V+   D + K+W     K +     HE  + S
Subjt:  ELVEVFLPWKATSS--HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTS

Query:  LD
        LD
Subjt:  LD

AT2G05720.1 Transducin/WD40 repeat-like superfamily protein5.4e-3475.28Show/hide
Query:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI
        S  FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH NLVSQVKYEPQE YFL TAS DM   IWS RD   VKSL GHE+KV SLDI
Subjt:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI

AT2G41500.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related4.4e-3676.4Show/hide
Query:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI
        S +FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH+NLVSQVKYEPQEGYFL TAS+DM   IWS RD   VKSL+GHE+KV SLDI
Subjt:  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDI

AT5G13480.1 Transducin/WD40 repeat-like superfamily protein1.4e-1338.46Show/hide
Query:  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSL
        W   S  + P    L +GG+D   ++WD R  + LC +  H N+V  VK+  Q G +L+TAS D I K++  R +K ++S  GH   VTSL
Subjt:  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSL

AT5G13480.2 Transducin/WD40 repeat-like superfamily protein1.4e-1338.46Show/hide
Query:  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSL
        W   S  + P    L +GG+D   ++WD R  + LC +  H N+V  VK+  Q G +L+TAS D I K++  R +K ++S  GH   VTSL
Subjt:  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATCCTTGGTATCATCTTGTGTCCTTGATGCACTTGCTTGCGTTTGGGATCTTCGAACTGGTAGAAGTGTTCTTGCCTTGGAAGGCCACGTCAAGCCAT
TTTTCACCCAACGGTTATCATTTAGCTACTGGTGGAGAAGATAACACTTGTCGGATATGGGATTTAAGGAAGAAAAAATTTCTTTGCATAATACCTGCGCATTCA
AACCTAGTTTCACAGGTGAAATATGAACCTCAGGAGGGATATTTCTTGGTTACTGCATCATTTGATATGATAGCAAAGATTTGGTCTGCTCGAGATGTTAAGCCT
GTGAAGTCACTCTCTGGTCACGAAGCAAAAGTTACATCGTTGGATATAATTTCAGTGTATTGCAACCGTCTCACATGGTCATAA
mRNA sequenceShow/hide mRNA sequence
GCCTTGCACGAATTGCCTTCCACCCGTCGGGCAAGTACTTGGGCACAACTAGCTTTGACAAGACCTGGAGATTATGGGATGTTGAAACTGGTGTAGAATTACTTC
TTCAAGATCAAGTAGAAGTGTCTATGGGATAGCCTTCCACCATGATGGATCCTTGGTATCATCTTGTGTCCTTGATGCACTTGCTTGCGTTTGGGATCTTCGAAC
TGGTAGAAGTGTTCTTGCCTTGGAAGGCCACGTCAAGCCATTTTTCACCCAACGGTTATCATTTAGCTACTGGTGGAGAAGATAACACTTGTCGGATATGGGATT
TAAGGAAGAAAAAATTTCTTTGCATAATACCTGCGCATTCAAACCTAGTTTCACAGGTGAAATATGAACCTCAGGAGGGATATTTCTTGGTTACTGCATCATTTG
ATATGATAGCAAAGATTTGGTCTGCTCGAGATGTTAAGCCTGTGAAGTCACTCTCTGGTCACGAAGCAAAAGTTACATCGTTGGATATAATTTCAGTGTATTGCA
ACCGTCTCACATGGTCATAAAGCTCTGGTCTGTTAATAGTAAAGACAAACAGACTATGGACATTGATTGACTTTTCATAGTACCAACATGGGGAATGACAGGTTC
TGTTCTATAAATTGTACGTCTATGTCCTTGAGTTCTAAAGAGACATGAGAGATGTTTTGAAACTTTGCGGCCTGAGGTGATAAAGAGCTTGGATCAGACGATCTC
CCTTTCTAATTATGTATCATCATGTATCTGATTGAATTTTGAATAGTGAGTTATTTGAAAACTTTTAACTTTTGTTTTTTTCTAGAAAAGAAAAGGAAGGATTAT
ATCAGTGGAGGACATAGAAAAAAAGGGAGATGAGATATTTCCCGCATGTTTGAGATTAAAAATGCACCAAAATTAGAGGTAAGAATGGATATGTAAATGACATGT
AGTTTTCTTTAGATTTCCTTTTGGTTAGAAATGGTTTGTGGCACCGATTACCATAGTGATTAAGGATGTCAAAATTATTTGGTTAAAATACAATTTTAATGGACT
CTAACCACATCTATAAATT
Protein sequenceShow/hide protein sequence
MMDPWYHLVSLMHLLAFGIFELVEVFLPWKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKP
VKSLSGHEAKVTSLDIISVYCNRLTWS