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Cmc03g0077171 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0077171
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionCBFD_NFYB_HMF domain-containing protein
Genome locationCMiso1.1chr03:24203723..24204210
RNA-Seq ExpressionCmc03g0077171
SyntenyCmc03g0077171
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]6.9e-6698.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_004144200.1 DNA polymerase epsilon subunit C [Cucumis sativus]2.5e-6094.89Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]1.1e-66100Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]2.2e-5990Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]7.4e-6091.43Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        M EEESG+AIRPEFPTGRVKKIMKLDKDI KVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKV P GTRRIDDFFRRP KTTSAE NES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein1.2e-6094.89Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAET

A0A1S3BDL4 dr1-associated corepressor5.2e-67100Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor3.3e-6698.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A6J1HCT3 DNA polymerase epsilon subunit C6.8e-5988.57Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C1.0e-5990Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRIRAVVDKVAPAGTRRIDDFFRRPTKTTSAETNES

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A8.9e-0835.05Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDASAKDEN
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDASAKDEN

Q14919 Dr1-associated corepressor1.7e-0637.33Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q2YDP3 Dr1-associated corepressor1.7e-0637.33Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A8.9e-0835.05Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDASAKDEN
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDASAKDEN

Q9W256 DNA polymerase epsilon subunit 41.3e-0639.13Show/hide
Query:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAV
        EA   + P  R++ IMKLD D+   N+EA+F+V+ A ELF+  L+ +S    A+ K+KT++   + MA+
Subjt:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAV

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C103.5e-0730.77Show/hide
Query:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + + + K+K +  +H+   V   +   +FL DS+P
Subjt:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C113.1e-0841.1Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFL
        FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFL

AT5G19490.1 Histone superfamily protein3.5e-0732.38Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDEN--RI
        ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +V   +  KTV   H++  V+   ++ DFL D++        +  +D++  + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDEN--RI

Query:  RAVVD
        R VVD
Subjt:  RAVVD

AT5G27910.1 nuclear factor Y, subunit C82.3e-0636.79Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVD
        + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD      + S A+A D   +  + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVD

Query:  KVAPAG
           P G
Subjt:  KVAPAG

AT5G43250.1 nuclear factor Y, subunit C131.6e-3664.03Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V AEKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP+QP    
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAS

Query:  AKDENRIRAVVDKVAPA---GTRRIDDFFRR-PTKTTSA
               ++V DK  PA   GTRRIDDFF +   KT SA
Subjt:  AKDENRIRAVVDKVAPA---GTRRIDDFFRR-PTKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCAGAATTTCCAACGGGCCGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTT
GTTTCTAGTCTCATGCGCCACAGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCACTTCCTCTTCCGTCTCAGCCGTCGGATGCGTCGGCGAAGGACGAGAATCGCATTCGCGCTGTC
GTTGACAAAGTGGCTCCTGCAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
TTTGTTCGTAATTCTGGATCGAAAGCCATTTTTCGGCAGCCATCACTTCATTCAGATTCCGGATATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCAGAATTTCCAA
CGGGCCGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACAGAACTCTTCCTTAAGCTTCTAGCT
GAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTC
ACTTCCTCTTCCGTCTCAGCCGTCGGATGCGTCGGCGAAGGACGAGAATCGCATTCGCGCTGTCGTTGACAAAGTGGCTCCTGCAGGAACGCGTCGAATCGATGATTTCT
TTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAGG
Protein sequenceShow/hide protein sequence
MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAV
VDKVAPAGTRRIDDFFRRPTKTTSAETNES