CuGenDBv2

Gene ID	Cmc03g0079801
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	SWIM-type domain-containing protein
Genome location	CMiso1.1chr03:25862475..25863376
RNA-Seq Expression	Cmc03g0079801
Synteny	Cmc03g0079801
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR004332 - Transposase, MuDR, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031318.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]

3.8e-116

95.41

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

KAA0059897.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]

8.5e-116

94.95

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFA+KELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

KAA0065296.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]

2.5e-115

94.5

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGG+LWRLRKYIANHNCSINVIQTTHKQAS+SLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

TYK09469.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]

3.8e-116

95.41

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

TYK23827.1 MuDR family transposase [Cucumis melo var. makuwa]

8.5e-116

94.95

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQAS+SLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like

1.9e-116

95.41

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

A0A5A7UZ18 Protein FAR1-RELATED SEQUENCE 4-like

4.1e-116

94.95

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFA+KELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

A0A5A7VG38 Protein FAR1-RELATED SEQUENCE 4-like

1.2e-115

94.5

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGG+LWRLRKYIANHNCSINVIQTTHKQAS+SLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like

1.9e-116

95.41

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

A0A5D3DJR8 MuDR family transposase

4.1e-116

94.95

Show/hide

Query:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST
        MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQAS+SLISDCIGKDFSSFDRST
Subjt:  MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRST

Query:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
        PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP          EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK
Subjt:  PNDIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINP----------EGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSK

Query:  YGGTLLTASTIDGNNQIF
        YGGTLLTASTIDGNNQIF
Subjt:  YGGTLLTASTIDGNNQIF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G64260.1 MuDR family transposase

1.1e-09

22.67

Show/hide

Query:  FASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRSTP
        F  ++ L K+  +  I+         +  +   F+C +  C W +RA+R +   L  + KY   H CS         + +A  I   +        R  P
Subjt:  FASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRSTP

Query:  N----DIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEI-------------NPE-GHFKYCFMAIGACIEGWKYCRPNISVD
             ++    + K G  +   K    K  V+  + G+  +S+ ++P                      NP+   F+  F +    IEG+++CRP I VD
Subjt:  N----DIMIHMRTKLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEI-------------NPE-GHFKYCFMAIGACIEGWKYCRPNISVD

Query:  GTFLKSKYGGTLLTASTIDGNNQIF
           L  KY   L+ AS +D  N+ F
Subjt:  GTFLKSKYGGTLLTASTIDGNNQIF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTGCTAGCAAGGAATTACTATCAAAGTCATTTTACTACATTGCTATAAAGAACAACTTTGAGTTCAAGACTGTGAGATCAAATTCTAAATCTATTGAGTTTAAGTG
CTCCCAAGATAATTGTCCATGGTATGTTCGTGCATCTCGTTACAAGGGTGGGGAATTATGGCGGCTAAGGAAGTATATTGCTAATCACAATTGCTCCATAAATGTTATTC
AAACTACTCATAAACAAGCATCTGCATCACTGATTAGTGATTGTATTGGAAAAGACTTTAGTTCTTTTGATCGTTCAACTCCAAATGATATTATGATTCACATGCGTACT
AAACTTGGTGTAAATGTTAGCTACTATAAAGCGTGGAGGGCAAAGGAACTTGTTATGAATTCTTTGAATGGTGAAGCAAAAGAATCTTATGCCTTGATTCCAAACTTTTT
CATGAAACTAAAAGAAATTAACCCAGAGGGACATTTTAAGTACTGTTTTATGGCTATTGGAGCATGCATTGAAGGATGGAAATATTGTAGGCCCAATATATCAGTTGACG
GTACATTTTTGAAATCTAAATATGGTGGAACTCTTTTGACAGCCTCAACAATTGATGGTAATAATCAAATTTTCCATTGGCCTTTAGTATTGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFASKELLSKSFYYIAIKNNFEFKTVRSNSKSIEFKCSQDNCPWYVRASRYKGGELWRLRKYIANHNCSINVIQTTHKQASASLISDCIGKDFSSFDRSTPNDIMIHMRT
KLGVNVSYYKAWRAKELVMNSLNGEAKESYALIPNFFMKLKEINPEGHFKYCFMAIGACIEGWKYCRPNISVDGTFLKSKYGGTLLTASTIDGNNQIFHWPLVL

Cmc03g0079801 (gene) of Melon (Charmono) v1.1 genome