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Cmc03g0084321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0084321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationCMiso1.1chr03:28590000..28590736
RNA-Seq ExpressionCmc03g0084321
SyntenyCmc03g0084321
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0009644 - response to high light intensity (biological process)
GO:0009645 - response to low light intensity stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009782 - photosystem I antenna complex (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0031409 - pigment binding (molecular function)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150882.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]1.3e-6289.63Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
        MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFA
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA

Query:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        MLGV+GVLLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

XP_008444623.1 PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo]8.8e-7299.26Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
        MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA

Query:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

XP_022951251.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata]3.0e-4875Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF
        MAVS+SAAT FHL PSSS ++   +P      LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF

Query:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

XP_023001834.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima]3.0e-4875Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF
        MAVS+SAATPFHL PSSS ++   +       LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF

Query:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

XP_038886221.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida]4.0e-5682.98Show/hide
Query:  MAVSISA----ATPFHLHP--SSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAEL
        MAVS+SA    AT FHL P  SSSS+TP FNP NQ +RLRSPSR +LLIA AQSEHRQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKWYVQAEL
Subjt:  MAVSISA----ATPFHLHP--SSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAEL

Query:  VHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        VH RFAMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  VHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

TrEMBL top hitse value%identityAlignment
A0A0A0LRB4 Chlorophyll a-b binding protein, chloroplastic6.2e-6389.63Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
        MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFA
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA

Query:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        MLGV+GVLLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

A0A1S3BBL1 Chlorophyll a-b binding protein, chloroplastic4.3e-7299.26Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
        MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA

Query:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

A0A5A7UY53 Chlorophyll a-b binding protein, chloroplastic4.3e-7299.26Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
        MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFA

Query:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  MLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

A0A6J1GH16 Chlorophyll a-b binding protein, chloroplastic1.5e-4875Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF
        MAVS+SAAT FHL PSSS ++   +P      LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF

Query:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

A0A6J1KNS0 Chlorophyll a-b binding protein, chloroplastic1.5e-4875Show/hide
Query:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF
        MAVS+SAATPFHL PSSS ++   +       LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRF

Query:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYG A
Subjt:  AMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVA

SwissProt top hitse value%identityAlignment
P10708 Chlorophyll a-b binding protein 7, chloroplastic1.5e-2655.21Show/hide
Query:  SRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        +R +  +  A    R  W PG  PPP+LDG+L GDFGFDPLGL  DP+SL+W  QAELVHCR+AMLG AG+ + +LL   GI   P WY AG  EY
Subjt:  SRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

P13869 Chlorophyll a-b binding protein, chloroplastic2.9e-2555.21Show/hide
Query:  SRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        SR   + A A    R  W PG  PP +LDG+L GDFGFDPLGLG DP+SLKW  QAELVH R+AMLG AG+ + + L   G+   P WY AG  EY
Subjt:  SRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

Q8LCQ4 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic1.6e-2357.32Show/hide
Query:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        R  W PG  PP +LDG+L GDFGFDPLGLG DPD+LKW+ QAEL+H R+AML V G+++ + L   G  E   WY+AG+ EY
Subjt:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic1.6e-3677.78Show/hide
Query:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL
        R TWLPGL+PPPYLDG L GD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGVAG+L TDLLR TGI  LPVWY AGAV++  A   TL
Subjt:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic1.5e-2657.73Show/hide
Query:  SRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        SRP   + A A    R  W PG  PP +LDG+L GDFGFDPLGL  DPDSLKW VQAE+VHCR+AMLG AG+ + + L   GI   P WY AG  EY
Subjt:  SRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

Arabidopsis top hitse value%identityAlignment
AT1G19150.1 photosystem I light harvesting complex gene 61.1e-2457.32Show/hide
Query:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        R  W PG  PP +LDG+L GDFGFDPLGLG DPD+LKW+ QAEL+H R+AML V G+++ + L   G  E   WY+AG+ EY
Subjt:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

AT1G45474.1 photosystem I light harvesting complex gene 51.2e-3777.78Show/hide
Query:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL
        R TWLPGL+PPPYLDG L GD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGVAG+L TDLLR TGI  LPVWY AGAV++  A   TL
Subjt:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL

AT1G45474.2 photosystem I light harvesting complex gene 51.2e-3777.78Show/hide
Query:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL
        R TWLPGL+PPPYLDG L GD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGVAG+L TDLLR TGI  LPVWY AGAV++  A   TL
Subjt:  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A41.9e-2462.03Show/hide
Query:  WLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        WLPGL  P YL G+L GD GFDPLGL EDP++LKW+VQAELV+ R+AMLGVAG+LL ++    GI  +P WY+AG  +Y
Subjt:  WLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY

AT3G61470.1 photosystem I light harvesting complex gene 21.1e-2757.73Show/hide
Query:  SRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY
        SRP   + A A    R  W PG  PP +LDG+L GDFGFDPLGL  DPDSLKW VQAE+VHCR+AMLG AG+ + + L   GI   P WY AG  EY
Subjt:  SRPSLLI-AHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISELPVWYNAGAVEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCAATTTCAGCAGCCACTCCCTTCCATCTCCACCCTTCTTCTTCGTCTCACACTCCCTTATTCAACCCTACTAACCAGTTCGTCCGCCTCCGATCG
CCTTCCCGCCCCTCACTATTAATAGCTCATGCTCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCCCCACCGTATCTCGACGGAACCCTTGTCGGC
GATTTTGGATTCGACCCACTTGGTCTCGGCGAGGACCCAGATAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTCGCCATGCTCGGCGTCGCT
GGAGTTCTTCTCACTGATTTGCTTCGCGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTGTGGCTGTATTCATCACTTTA
TCTGGTTTTACTTGGCTTTGA
mRNA sequenceShow/hide mRNA sequence
CTCAACCTATAGGAAAAGTAAAGAAAACAAAGAGAGAACTAAGAAACAAATAAAGAGGATAACAAGAAGAATAACGGTAGCCACTGCAAAAGGAGAGCAAAGATC
CATGGCGGTTTCAATTTCAGCAGCCACTCCCTTCCATCTCCACCCTTCTTCTTCGTCTCACACTCCCTTATTCAACCCTACTAACCAGTTCGTCCGCCTCCGATC
GCCTTCCCGCCCCTCACTATTAATAGCTCATGCTCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCCCCACCGTATCTCGACGGAACCCTTGTCGG
CGATTTTGGATTCGACCCACTTGGTCTCGGCGAGGACCCAGATAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTCGCCATGCTCGGCGTCGC
TGGAGTTCTTCTCACTGATTTGCTTCGCGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTGTGGCTGTATTCATCACTTT
ATCTGGTTTTACTTGGCTTTGAAGGTTTGTGGAA
Protein sequenceShow/hide protein sequence
MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVA
GVLLTDLLRVTGISELPVWYNAGAVEYGVAVFITLSGFTWL