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Cmc03g0085471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc03g0085471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr03:29235014..29235803
RNA-Seq ExpressionCmc03g0085471
SyntenyCmc03g0085471
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process)
GO:0000502 - proteasome complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033825.1 pol protein [Cucumis melo var. makuwa]1.7e-1392.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
TYK01576.1 pol protein [Cucumis melo var. makuwa]1.7e-1392.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
TYK20443.1 pol protein [Cucumis melo var. makuwa]1.7e-1392.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
TYK28368.1 pol protein [Cucumis melo var. makuwa]1.7e-1392.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
TYK28422.1 pol protein [Cucumis melo var. makuwa]1.7e-1392.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
TrEMBL top hitse value%identityAlignment
A0A5A7VKS7 Reverse transcriptase8.1e-1492.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
A0A5D3DE92 Reverse transcriptase8.1e-1492.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
A0A5D3DTQ3 Reverse transcriptase8.1e-1492.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
A0A5D3DW16 Reverse transcriptase8.1e-1492.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
A0A5D3DY07 Reverse transcriptase8.1e-1492.5Show/hide
Query:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
        +IY+GYDECRDGECRNDLCDMLYADAMCM+TAIRVPVSLI
Subjt:  KIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGCAAGATCTATTATGGTTACGACGAATGTCGGGACGGAGAGTGTAGAAATGATTTATGTGACATGTTATATGCTGATGCCATGTGTATGTTTACTGCAATTAG
GGTACCTGTTAGCTTGATTTCTGTTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTGA
mRNA sequenceShow/hide mRNA sequence
GGTTAGGACTCGACAAGTAGATCTCCAGGTAAGAGATTCTACTACTAGTTTCATGTTTGAAGTATGAGACTGTGTATGCCCGATGTTGCATATTGAGGATTTGACAGTAT
GATGCCTGAAATAAATGCTAGTATGATGCAAATGATGATATAGTTGTGCTATAGCCTGTTATGTGTGGCAAGATCTATTATGGTTACGACGAATGTCGGGACGGAGAGTG
TAGAAATGATTTATGTGACATGTTATATGCTGATGCCATGTGTATGTTTACTGCAATTAGGGTACCTGTTAGCTTGATTTCTGTTAGAGTCGTACCTGCATGGGTGTCCT
TCGGGATCACCACCTATTGAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGATATAGACATGACTCGAGTGACTCGACGGGGTCCTCGCATCCCGACTGTCCTAG
GTGTCCCTGGGCACCGAAGACCAGAGTTACGTTCCTACGGGAGCGCATGATTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCAGTTATCAGGGCTCTAACAGGAA
GTTAACAGGCACCTAGTGGGACTAGTAGTGGGTCCCTTACTGAGTATTTTTATACTCATTCTCTCCATTTTATGTTTTCAGGTAGAGGACGAGGCAAGGGCAAGGGCAAG
CTGGCGAGCGACCCGAAGTGAGACCGAGGAGGGCCATAGGGACTACCGCTTCCGCTTATTTCTTATTTCAGATTTTAGCATTTGAGTTTGAGTACTTTTTATTTTTCACT
ATCTTTTATGTAGATAGGGC
Protein sequenceShow/hide protein sequence
MCGKIYYGYDECRDGECRNDLCDMLYADAMCMFTAIRVPVSLISVRVVPAWVSFGITTY