CuGenDBv2

Gene ID	Cmc03g0086201
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	CMiso1.1chr03:29597806..29598414
RNA-Seq Expression	Cmc03g0086201
Synteny	Cmc03g0086201
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0000325 - plant-type vacuole (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598253.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-92

92.57

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSNE+SNLS FLSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

7.6e-98

98.02

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

7.6e-98

98.02

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

3.1e-99

100

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        SK
Subjt:  SK

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.1e-93

94.55

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGL+SSKSN+NSNLST LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

3.7e-98

98.02

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

1.5e-99

100

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        SK
Subjt:  SK

A0A5A7UYJ2 Photosystem II core complex proteins psbY

1.5e-99

100

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        SK
Subjt:  SK

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

7.2e-86

87.62

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIAGAVF+   +SDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

F6GVJ9 Uncharacterized protein

9.7e-75

78.71

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL
        MAAT+ATMA+L+ KC SINS K  N  K   KPISLLS+QNLPKGL + KS+EN NLST L+ TAIAGA+F+TL + DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLP+IPAIAWVLFNILQPALNQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASEIA +ADA+SSD+RGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SK
        S+
Subjt:  SK

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

2.7e-45

55.12

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

1.5e-48

60.29

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Query:  MAATMA-TMAVLSVKCTSINSTKTHNTQ-KIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAAD---GDN
        MAATMA TMAVL+ KC ++N+ KT +T  K   KPISL      P GL +SK      LS  +++ AIAGAVFATLG+ DPAFA QQ+A+IAA+    DN
Subjt:  MAATMA-TMAVLSVKCTSINSTKTHNTQ-KIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAAD---GDN

Query:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL
        RGLALLLP+IPA+ WVLFNILQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LLL VV PAI WVL+NILQPAL
Subjt:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL

Query:  NQLNRMRSK
        NQLN+MRS+
Subjt:  NQLNRMRSK

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.9e-46

55.12

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Query:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

Sequences

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CDS sequence

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ATGGCAGCTACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCATAACACCCAAAAGATAATCCCCAAACCTATCTCCCTCCT
CTCTCTCCAAAACCTTCCAAAAGGCCTTATTTCATCAAAATCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACTT
TGGGAACATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATCCCGGCCATAGCATGG
GTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTAT
GTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGCGATAGCAGGGGACAACTTCTTCTGTTTGTCGTAGCACCCGCCATTCTTTGGG
TGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCAAGTGA

mRNA sequence

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Protein sequence

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MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAW
VLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSK

Cmc03g0086201 (gene) of Melon (Charmono) v1.1 genome