CuGenDBv2

Gene ID	Cmc03g0086351
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Coilin
Genome location	CMiso1.1chr03:29647433..29648172
RNA-Seq Expression	Cmc03g0086351
Synteny	Cmc03g0086351
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0015030 - Cajal body (cellular component) GO:0030619 - U1 snRNA binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR024822 - Coilin IPR031722 - Coilin, N-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061051.1 coilin-like isoform X1 [Cucumis melo var. makuwa]

4.3e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

XP_008444385.1 PREDICTED: coilin-like isoform X1 [Cucumis melo]

4.3e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

XP_008444386.1 PREDICTED: coilin-like isoform X2 [Cucumis melo]

4.3e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

XP_008444387.1 PREDICTED: coilin-like isoform X3 [Cucumis melo]

4.3e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

XP_011649500.1 coilin isoform X1 [Cucumis sativus]

3.1e-39

94.25

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRL+FE+GQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLD+F LR+ACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQQ3 Coilin

1.5e-39

94.25

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRL+FE+GQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLD+F LR+ACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

A0A1S3BA97 Coilin

2.1e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

A0A1S3BAZ0 Coilin

2.1e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

A0A1S3BB08 Coilin

2.1e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

A0A5A7V5I3 Coilin

2.1e-41

100

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
        MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVR

SwissProt top hits

e value

%identity

Alignment

Q8RWK8 Coilin

2.5e-20

57.95

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILL--KSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIV
        M    VR+RLVFE+ ++LSK  +K GL RSW++L  K H  TIS+FS ++   F L  ACPHGL LSM+GFVLPPFE + +LKDKDIV
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILL--KSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIV

Arabidopsis top hits

e value

%identity

Alignment

AT1G13030.1 sphere organelles protein-related

1.8e-21

57.95

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Query:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILL--KSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIV
        M    VR+RLVFE+ ++LSK  +K GL RSW++L  K H  TIS+FS ++   F L  ACPHGL LSM+GFVLPPFE + +LKDKDIV
Subjt:  MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILL--KSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATTCGGGCACTGTGAGAATACGTTTGGTTTTTGAAGAGGGGCAGCTACTGAGCAAGTCTCACAGGAAAAATGGACTGAAACGGAGTTGGATTCTTCTCAAATCTCA
TCTCCCTACCATTTCCGACTTCTCTTCCTATCTTCTTGACTTTTTCTTGCTTCGCAGTGCTTGTCCTCATGGCCTCATTCTTTCCATGGATGGTTTTGTTCTACCTCCTT
TTGAGCCTACTTCTATTTTGAAGGATAAAGATATTGTTAGGTCAGTTTGTGGGCCGCATTTCCTCTTTCAATACTTCGTCTCTATAAGACCAGGTGTCCCAGTTTGCCGC
ATTGTTCTTCTAACAGGGTTAAGAAGAATGCGGACAATGTGGCTGCAGTTGACAAGATGGAAGAGCTTGTGA

mRNA sequence

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TCTGAGTTGCTTTGCCGCTGGAAGATTCTTCGGATGATCGATGAATTCGGGCACTGTGAGAATACGTTTGGTTTTTGAAGAGGGGCAGCTACTGAGCAAGTCTCACAGGA
AAAATGGACTGAAACGGAGTTGGATTCTTCTCAAATCTCATCTCCCTACCATTTCCGACTTCTCTTCCTATCTTCTTGACTTTTTCTTGCTTCGCAGTGCTTGTCCTCAT
GGCCTCATTCTTTCCATGGATGGTTTTGTTCTACCTCCTTTTGAGCCTACTTCTATTTTGAAGGATAAAGATATTGTTAGGTCAGTTTGTGGGCCGCATTTCCTCTTTCA
ATACTTCGTCTCTATAAGACCAGGTGTCCCAGTTTGCCGCATTGTTCTTCTAACAGGGTTAAGAAGAATGCGGACAATGTGGCTGCAGTTGACAAGATGGAAGAGCTTGT
GAACAAGTGCACTGACTACAAAAATGAAGCAGATGCAGTTGATGAACCTTATGATCTTCTGCGTCAGTTGGAAGACACTTTGGATG

Protein sequence

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MNSGTVRIRLVFEEGQLLSKSHRKNGLKRSWILLKSHLPTISDFSSYLLDFFLLRSACPHGLILSMDGFVLPPFEPTSILKDKDIVRSVCGPHFLFQYFVSIRPGVPVCR
IVLLTGLRRMRTMWLQLTRWKSL

Cmc03g0086351 (gene) of Melon (Charmono) v1.1 genome