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Cmc04g0087491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0087491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationCMiso1.1chr04:482959..483369
RNA-Seq ExpressionCmc04g0087491
SyntenyCmc04g0087491
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR001907 - ATP-dependent Clp protease proteolytic subunit
IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QEZ90582.1 ClpP [Archidasyphyllum excelsum]2.3e-4283.04Show/hide
Query:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG
        +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVG
Subjt:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG

Query:  GEITKCLAFPQA
        GEITK LAFP A
Subjt:  GEITKCLAFPQA

QKY75378.1 ClpP [Barnadesia lehmannii]2.3e-4283.04Show/hide
Query:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG
        +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVG
Subjt:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG

Query:  GEITKCLAFPQA
        GEITK LAFP+A
Subjt:  GEITKCLAFPQA

RXV70727.1 ATP-dependent Clp protease proteolytic subunit [bacterium 1XD8-92]2.3e-4285.09Show/hide
Query:  TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEIT
        TVLK YNFILINRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI GV IYDTMQFV+P VQTICM L ASMGSFILVGGEIT
Subjt:  TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEIT

Query:  KCLAFPQA---CFF
        K LAFP A   CFF
Subjt:  KCLAFPQA---CFF

YP_009176028.1 clp protease proteolytic subunit [Ficus racemosa]4.7e-4386.49Show/hide
Query:  DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGG
        D  TV KGYNFI INRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI G+GIYDTMQFVQP VQTICM LAASMGSFILVGG
Subjt:  DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGG

Query:  EITKCLAFPQA
        EITK LAFP A
Subjt:  EITKCLAFPQA

YP_009912275.1 ClpP [Fulcaldea stuessyi]2.3e-4283.04Show/hide
Query:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG
        +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVG
Subjt:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG

Query:  GEITKCLAFPQA
        GEITK LAFP A
Subjt:  GEITKCLAFPQA

TrEMBL top hitse value%identityAlignment
A0A0N9XTU2 ATP-dependent Clp protease proteolytic subunit2.3e-4386.49Show/hide
Query:  DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGG
        D  TV KGYNFI INRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI G+GIYDTMQFVQP VQTICM LAASMGSFILVGG
Subjt:  DCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGG

Query:  EITKCLAFPQA
        EITK LAFP A
Subjt:  EITKCLAFPQA

A0A249RXJ0 ATP-dependent Clp protease proteolytic subunit5.6e-4289.22Show/hide
Query:  NFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFP
        +++ +NRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICM LAASMGSFILVGGEITK LAFP
Subjt:  NFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFP

Query:  QA
         A
Subjt:  QA

A0A4Q2AMQ5 ATP-dependent Clp protease proteolytic subunit1.1e-4285.09Show/hide
Query:  TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEIT
        TVLK YNFILINRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI GV IYDTMQFV+P VQTICM L ASMGSFILVGGEIT
Subjt:  TVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEIT

Query:  KCLAFPQA---CFF
        K LAFP A   CFF
Subjt:  KCLAFPQA---CFF

A0A5J6RKS0 ATP-dependent Clp protease proteolytic subunit1.1e-4283.04Show/hide
Query:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG
        +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVG
Subjt:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG

Query:  GEITKCLAFPQA
        GEITK LAFP A
Subjt:  GEITKCLAFPQA

A0A7D5FAA0 ATP-dependent Clp protease proteolytic subunit1.1e-4283.04Show/hide
Query:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG
        +D  TV KGYN  LINRLYRE LLFLGQEVDSEI NQLIGL+VYLSMEDDTKDLYLFINSPGGGV+ G+GIYDTMQFVQP V TICM LAASMGS +LVG
Subjt:  MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVG

Query:  GEITKCLAFPQA
        GEITK LAFP A
Subjt:  GEITKCLAFPQA

SwissProt top hitse value%identityAlignment
Q09WZ2 ATP-dependent Clp protease proteolytic subunit1.3e-4086.87Show/hide
Query:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        +INRLYRE LLFLGQEVDSEI NQLIGL+V+LS+EDDTKDLYLFINSPGG VI G+GIYDTMQFVQP VQTICM LAASMGSFILVGGEITK LAFP A
Subjt:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

Q0G9T7 ATP-dependent Clp protease proteolytic subunit7.3e-3985.57Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+E+DTKDLYLFINSPGG VI GV IYDTMQFV+P VQTICM LAASMGSFIL GGEITK LAFP A
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

Q33C07 ATP-dependent Clp protease proteolytic subunit7.3e-3985.57Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+ED+TKDLYLFINSPGG VI GV IYDTMQFV+P V TICM LAASMGSFILVGGEITK LAFP A
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

Q3C1K4 ATP-dependent Clp protease proteolytic subunit7.3e-3985.57Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+ED+TKDLYLFINSPGG VI GV IYDTMQFV+P V TICM LAASMGSFILVGGEITK LAFP A
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

Q9M3K5 ATP-dependent Clp protease proteolytic subunit2.5e-3986.6Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        NRLYRE LLFLGQEVDSEI NQLIGL+VYLS+EDDTKDLYLFINSPGG VI GV IYDTMQFV+P V TICM LAASMGSFILVGGEITK LAFP A
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 52.8e-1738.38Show/hide
Query:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        +I++L++  ++  G  VD ++ N ++  ++YL   D TKD+ +++NSPGG V  G+ I+DTM+ ++P V T+C+ LAASMG+F+L  G   K  + P +
Subjt:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

AT1G11750.1 CLP protease proteolytic subunit 61.4e-1332.69Show/hide
Query:  LYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQACFFQK
        L+R  ++F+GQ +++++  ++I  +V L+  DD  D+ +++N PGG     + IYD M +++P V T+   +AAS G+ +L GGE     A P       
Subjt:  LYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQACFFQK

Query:  QNET
        Q +T
Subjt:  QNET

AT1G12410.1 CLP protease proteolytic subunit 23.0e-1638.95Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFP
        N LYRE ++F+GQ +D E  NQ++  ++YL   DD++ +Y+++N PGG +   + IYDTM+ ++  V T C+ LA ++  F+L  GE     A P
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFP

AT1G66670.1 CLP protease proteolytic subunit 32.8e-1742.27Show/hide
Query:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        N L R+ ++FLG +VD    + +I  ++ L  ED  +D+ LFINSPGG +  G+GIYD M+  +  V T+C+ LAASMG+F+L  G   K    P +
Subjt:  NRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA

ATCG00670.1 plastid-encoded CLP P2.7e-3675.76Show/hide
Query:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA
        + NRLYRE L FLGQEVD+EI NQLI L++YLS+E DTKDLYLFINSPGG VI G+ IYDTMQFV+P VQTICM LAAS+ SFILVGG ITK +AFP A
Subjt:  LINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFPQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGTTTTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAATATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAGATTTTGAATCA
ACTCATTGGTCTTATAGTATATCTCAGTATGGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGGCGGAGTAGGTATTTATGATA
CTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCG
CAAGCTTGTTTTTTTCAAAAACAAAATGAGACAACAAATAAATGTTACTATAGTTCATTTGTACTAAACATGCAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGTTTTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAATATTACTTTTTTTAGGCCAAGAGGTTGATAGTGAGATTTTGAATCA
ACTCATTGGTCTTATAGTATATCTCAGTATGGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGGCGGAGTAGGTATTTATGATA
CTATGCAATTTGTGCAACCTCATGTACAGACAATATGCATGGAATTAGCCGCTTCAATGGGATCTTTTATTCTAGTCGGAGGAGAAATTACCAAATGTCTAGCATTCCCG
CAAGCTTGTTTTTTTCAAAAACAAAATGAGACAACAAATAAATGTTACTATAGTTCATTTGTACTAAACATGCAAAAATAG
Protein sequenceShow/hide protein sequence
MDCFTVLKGYNFILINRLYREILLFLGQEVDSEILNQLIGLIVYLSMEDDTKDLYLFINSPGGGVIGGVGIYDTMQFVQPHVQTICMELAASMGSFILVGGEITKCLAFP
QACFFQKQNETTNKCYYSSFVLNMQK