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Cmc04g0089741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0089741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L16
Genome locationCMiso1.1chr04:2084496..2088321
RNA-Seq ExpressionCmc04g0089741
SyntenyCmc04g0089741
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS96821.1 Os06g0220100, partial [Oryza sativa Japonica Group]1.6e-0632.32Show/hide
Query:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW
        ++R   G   +++RR+++FP + AVR+V  +GG VHQ    V    +   ++ A RR L+R     L++P+ ERV    G  +  V ++ VH+H+   W
Subjt:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW

CAG1856399.1 unnamed protein product [Musa acuminata subsp. malaccensis]3.7e-0839.6Show/hide
Query:  MSVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIF
        +S+ NQR   G  RIKQRR Q+  P  AVR+V   GG VH+ +  V    S P +  A RRRL+      L + + ERV    G + RQV ++AV S + 
Subjt:  MSVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIF

Query:  I
        +
Subjt:  I

GER55536.1 50S ribosomal protein L16 [Striga asiatica]1.2e-0638.61Show/hide
Query:  SVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI
        S SN+R   G  R+  RR+QI PP+ AVR+V  +   V Q++ RV    + P++  A R RL+R     L  P  E VR   G+  RQV ++ VHS++  
Subjt:  SVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI

Query:  R
        R
Subjt:  R

KAB8101767.1 hypothetical protein EE612_032745, partial [Oryza sativa]1.6e-0632.32Show/hide
Query:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW
        ++R   G   +++RR+++FP + AVR+V  +GG VHQ    V    +   ++ A RR L+R     L++P+ ERV    G  +  V ++ VH+H+   W
Subjt:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW

RDX60926.1 hypothetical protein CR513_60891, partial [Mucuna pruriens]1.1e-0740.59Show/hide
Query:  SNQRRTSGSDRIKQRRKQIFPPITAVR--IVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI
        SN+R   G DR+   R+Q   P TA    +V      +HQN+ RV     F +YSGA R RL+R     L+ PIPERVR  +G+  RQ  Y++VH  + +
Subjt:  SNQRRTSGSDRIKQRRKQIFPPITAVR--IVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A059BKL2 Uncharacterized protein1.7e-0639.58Show/hide
Query:  SNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHI
        S+QRRT    RI + R Q+  P+ AVR+V R    +HQ +P V          GA RRRL+R    AL+ P+ ERVR   G+++ QV ++ V   I
Subjt:  SNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHI

A0A0P0WUF2 Os06g0220100 protein (Fragment)7.6e-0732.32Show/hide
Query:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW
        ++R   G   +++RR+++FP + AVR+V  +GG VHQ    V    +   ++ A RR L+R     L++P+ ERV    G  +  V ++ VH+H+   W
Subjt:  NQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRW

A0A371E4F5 Uncharacterized protein (Fragment)5.3e-0840.59Show/hide
Query:  SNQRRTSGSDRIKQRRKQIFPPITAVR--IVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI
        SN+R   G DR+   R+Q   P TA    +V      +HQN+ RV     F +YSGA R RL+R     L+ PIPERVR  +G+  RQ  Y++VH  + +
Subjt:  SNQRRTSGSDRIKQRRKQIFPPITAVR--IVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI

Query:  R
        R
Subjt:  R

A0A371E4L3 Uncharacterized protein (Fragment)4.9e-0637.23Show/hide
Query:  TSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIR
        TSGS  +K+  +QIFP I AV IV  +G  VHQ  P V   S+    +GA     +R   G+L   IPERV     +++  V  ++V +H+ +R
Subjt:  TSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIR

A0A5A7RDX8 50S ribosomal protein L165.8e-0738.61Show/hide
Query:  SVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI
        S SN+R   G  R+  RR+QI PP+ AVR+V  +   V Q++ RV    + P++  A R RL+R     L  P  E VR   G+  RQV ++ VHS++  
Subjt:  SVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFI

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCTCAAACCAGAGGCGAACAAGTGGAAGTGATCGGATTAAACAACGCCGGAAGCAGATATTTCCGCCCATTACCGCCGTTCGCATTGTAACTCGCTCCGGTGG
TTCGGTCCACCAGAACCTCCCCAGGGTACCCTGGAAAAGCTCCTTTCCCAAATATTCCGGTGCATGCCGTCGCCGCCTCGAGCGGTGCTTCCTTGGAGCCTTGATAAAAC
CCATTCCCGAACGGGTTCGTCGCAGTACCGGCAAGAAGAGTCGCCAAGTTTATTATAACGCCGTCCATTCCCACATCTTTATTCGGTGGCAGTAA
mRNA sequenceShow/hide mRNA sequence
TTAGTACACAAAAATGAAACAAAAAACTGTTATACACACCATTTGATGAGCCATCCAAAGAGAAAATGCTGCATAATGGGTACTTTCTCTAATACTTCCACCTTATACAT
CTTCAGCAACCCACTATTGACCTTGTTCCAATTAGGCACCCCACTAATATCGTCAAGCAATGGCGAATGCTCTGAAAATGGACCCTTCTTCACCTTCTTTATAAAAGAAA
TACACGAGAGATAAAGATACTCGTTGGAGAAATTGTCTAGTATATCCTGACTATGAATGGATTTAGGTTTCAGATACTTATGATCTATCAACTGTGATGATCCAAAAATG
TACGACAAGAAATGGTAATCATCAAGGCCCCAAACACCATGGGAACCCGCAGGCTCTAAACAATAAACCAATTGCAATTTCCTCATTAAATCAAGGTACTTCACGAAAAC
CCTAACTACAACAGCAGGGTAATCCTCCTCTTTGATTGTCCCCAATTTAGCCAAGCAATACAACCAGGCTGCGAAATTTGTCTCGTGCCCAGTACCATAGTCGATTCGGC
TCGAATTCCCGAAGCTATCAGTGAAATAGGGCACAATTTCCACGGTGGCTGAATGAAGATCCTCGGGGAGAAATCGAAGCATAAGAGAATCGCTGTTTTCCACCATCTGC
GCATGCCATATCCGATAAGAAAGGTTTCCATATCGAGACGCCATACGCGCCGGTGGAATATCGTCGATCCATTGAATCAGAGTATCAAGAATAGAGACAATGGAATTAAC
GGTGTCAGATTGGTAGCAAGGATCAGAAATTTTCCGACCTCGAGTTGATTCGGAAAGAGCAACTATGAAACCAAGAAAATTTCTTCCGGATTCGGAATCGTGGAATTGGC
GTATATCATCGGGAGAATGGATTCTTTTAGAAGGAGCTTGGAAATGGTAAGGGGGAGAGACGACAGAGACTCTTTGAGGCTGAGGGACCGGAGAGAGGATTATGGATTGA
CTAGGTCGGTTGTTGACCGGAATATTGGGCGACGGGGTGGGACGATGAGTCGGTGGCGGGAAATTGTTCGGAGCGTGGAAATTAGGCGAAGGGACAGGTAATTCTGGGGA
TTTAGAGTCTTTGGATTGCATTTTCTGGAAAGAATTTGACGGGATATGTTCTTTGGAGAGGACGAAATTGGAGTTTCAGAAGAACGGGGAATGTCGGAAAATTGTGGGTT
CTTCGCCGGATCTTTGAGTACGTCAGCTCTATAGCTAATGGCGGAAGCCCAAGGAAATGTCGGTCTCAAACCAGAGGCGAACAAGTGGAAGTGATCGGATTAAACAACGC
CGGAAGCAGATATTTCCGCCCATTACCGCCGTTCGCATTGTAACTCGCTCCGGTGGTTCGGTCCACCAGAACCTCCCCAGGGTACCCTGGAAAAGCTCCTTTCCCAAATA
TTCCGGTGCATGCCGTCGCCGCCTCGAGCGGTGCTTCCTTGGAGCCTTGATAAAACCCATTCCCGAACGGGTTCGTCGCAGTACCGGCAAGAAGAGTCGCCAAGTTTATT
ATAACGCCGTCCATTCCCACATCTTTATTCGGTGGCAGTAACGGTGGATTCTGAGGACCATACACCGGCCGGTGAAACGGCCAAGCACACTGCCCTGGACATTGTGTTGC
TGAATTACCCACCCAAATATACGCAAATTTGTACCTGTTCCCCTTAATCGGAGCTCCGGCTAAAACCCCATGAGACCCACATTTGTTAAAACAGAATCCGTTTACGGTAA
CATCCGCCGCCGTTAAAACCACATTGATAGCATATTTCTGCCTGCCTCTGGAAGCCAGAGAAAGAATATGACGATCGGTTAGAGATTTTCCAAGGGAATATTTGGGGTCA
AGAATCTGTGATCCCAACGAGAGAGTAAGACGAGAGGATTTTGATTTCTTAGCAAGCTTATAAAATCTGTTAATCGCATTCCACCAAGTGGAAACAGAGGGATGAGGGGA
AATGATTGATTTGGAAGAAGAAGAAGAAGAAGAAATGGAAGTGATGAAATCGAGAACAATGGATTTCTGAGAAGGATTGAAATTGCCATACCAAATGAGATTGATGGTTA
CGTTACCGGAGAGAAGAGGGCCGCCGTGGTATTCAAAGGGGAAGGAGTCGAGATCAAGAGGTTGGTCGGCGAAGGCGAGGTTACCGGCAACGGCGACGGTGAAGGTGGCG
GAGATGGAGTGAAGAGAGGAAGAGAGTAAAAGGAGAAGAAGGAGAGTAATGGAGGACATGATGGATGGTTGGAAGGAATAAGGTGAAGAGAAATGTAAGGGAAGAAAATG
GGTATTTATTGGAAGAGGGAAAGGAGAAGGAAGAGGTGT
Protein sequenceShow/hide protein sequence
MSVSNQRRTSGSDRIKQRRKQIFPPITAVRIVTRSGGSVHQNLPRVPWKSSFPKYSGACRRRLERCFLGALIKPIPERVRRSTGKKSRQVYYNAVHSHIFIRWQ