; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0090511 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0090511
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationCMiso1.1chr04:2664287..2669241
RNA-Seq ExpressionCmc04g0090511
SyntenyCmc04g0090511
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]1.7e-13289.3Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQT DSSSAK+RE+PGLVP TVKQISEASHSGEEKANF IN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q++DSIVKTP+QNGSSGY T SS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_004136317.1 replication protein A 32 kDa subunit A [Cucumis sativus]5.1e-14296.31Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DT QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQT+DSIVKTPVQNGS+GYHTTSSAIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_008466326.1 PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]5.9e-14699.63Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQT+DSIVKTPVQNGSSGYHTTSSAIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]6.7e-13490.04Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q++DSIVKTP+QNGSSGY T SS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_038897330.1 replication protein A 32 kDa subunit A-like [Benincasa hispida]6.5e-13793.36Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFS TQFDS SGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFV+N VDITNV IVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNL GDG TQ Q++DSIVKTPVQNGSSG+ T SS IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein2.5e-14296.31Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DT QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQT+DSIVKTPVQNGS+GYHTTSSAIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like2.8e-14699.63Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQT+DSIVKTPVQNGSSGYHTTSSAIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A5.4e-12185.24Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQ  DS+SAKSRESPGLVPVTVKQISEA HSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQM++IQDGMY+RVNGHLK+FQ N QIFAFSVRPVTN DEITFHF+ECIHD+LRNSKLQ L G  STQ Q++DS V   VQ+GSSGY T SS + S Q
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+ D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIP+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like3.3e-13490.04Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q++DSIVKTP+QNGSSGY T SS +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.5e-13188.64Show/hide
Query:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDSGSGFT SQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANF IN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTS--SAIPS
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHF+ECIH+HLRNSKLQNL G GSTQ Q++DSIVKTP+QNGSSGY T S  S +PS
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTS--SAIPS

Query:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C1.5e-2238.75Show/hide
Query:  SGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        S +G  ++     S  +     G VP TV  IS +     +  G     F I+ V+ TNV ++G+V     R+TD+ FT+DD TG I   RW+ D  DT+
Subjt:  SGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRN--SKLQ
            IQ+G+YV+V  +L  FQ+ KQ  A S+RP+ NF+E+  HF+EC+H HL +  SK+Q
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRN--SKLQ

Q6H7J5 Replication protein A 32 kDa subunit B6.3e-4235.69Show/hide
Query:  GSGFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        G GF  SQ  +++           KSR +  L+P+TVKQI +AS + ++K+NF +N ++++ V +VG++  K +R TD++FT+DDGTG +   RW ND+ 
Subjt:  GSGFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        DTK+M +IQ+G YV VNG LK FQ  +Q+ A+SVR +TNF+++T HFL C+H HL  ++ ++     +       ++ +  +    S     +S   + Q
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS
        +T       D LVL+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A3.6e-4541.58Show/hide
Query:  FSSTQFDSGSGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW
        FS     S S FTSSQ    + ++ +KSR +   +P+TVKQISEA  S   GE+ A FV++ V+  NV +VG VS K ERNTD++FT+DDGTG +   RW
Subjt:  FSSTQFDSGSGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW

Query:  VNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSA
        VND  D+ +   +Q+GMYV V G LK  Q  K+  AF++RPVT+++E+T HF++C+  HL N+K Q +     T      S + +   NG S   T +S 
Subjt:  VNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSA

Query:  IPSEQHTVDV----KKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA
          +    + V    K   +  VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  IPSEQHTVDV----KKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B4.2e-4640.22Show/hide
Query:  SGSGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        +G GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+ VDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SGSGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        +ME ++ GMYVR++GHLK+FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +   +G    S+  P++ 
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A5.3e-6548.04Show/hide
Query:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     SG GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VIN + +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH++ECIH + +NS+ Q  +    TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A23.8e-6648.04Show/hide
Query:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     SG GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VIN + +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH++ECIH + +NS+ Q  +    TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A23.8e-6648.04Show/hide
Query:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     SG GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VIN + +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SGSGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY
        I CKRWV++TFD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH++ECIH + +NS+ Q  +    TQ       V T  Q GS+  
Subjt:  IGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA323.0e-4740.22Show/hide
Query:  SGSGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK
        +G GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+ VDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SGSGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ
        +ME ++ GMYVR++GHLK+FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +   +G    S+  P++ 
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA322.5e-4640.32Show/hide
Query:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLK
        SS ++R+   L+P+T+KQ+S AS +GE  +NF I+ VDI  V IVG++S    R T + F VDDGTG + C RW +   +T++ME ++ GMYVR++GHLK
Subjt:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLK

Query:  MFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQ
        +FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +   +G    S+  P++ +  D      + VL+YL 
Subjt:  MFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQ--NLKGDGST-QLQTADSIVKTPVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQ

Query:  LPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
         P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  LPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGCACCCAGTTTGATTCCGGCAGCGGATTTACCTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCTCCGGGCTTGGTTCCGGTAACTGT
GAAACAGATCAGTGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGACGTCGATATAACAAACGTTACAATCGTTGGAAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGACATCACATTCACTGTAGACGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGAT
GGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAACAAGCAAATATTTGCATTCTCCGTTAGGCCTGTTACAAACTTTGATGAAATTACCTTCCACTT
TCTTGAATGCATACATGACCACTTGCGGAATTCCAAGTTACAGAATCTCAAAGGCGATGGATCAACACAGCTCCAAACCGCAGATTCAATTGTGAAGACTCCAGTGCAGA
ATGGCTCGAGTGGATATCATACAACATCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCC
TCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
CTTTGCAGCTAACAAGTTTTCGCGGGAAATTAGAGCATCAATGGCGGGAAAACGAAAAGCTTCTACTTCCATATGTTCATATTTGCTCCGTAATTCTCTTCCATTTCTCC
ATTGTTAATTGTTCATCGCGTTATTACTCACAGGATTTTTAAGTATGTTCTCCAGCACCCAGTTTGATTCCGGCAGCGGATTTACCTCTTCTCAGACCAATGACTCCTCT
TCAGCGAAGAGTCGAGAATCTCCGGGCTTGGTTCCGGTAACTGTGAAACAGATCAGTGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGACGTCGA
TATAACAAACGTTACAATCGTTGGAAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCACTGTAGACGATGGAACAGGAACAATTGGTTGCAAAAGATGGG
TAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGATGGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAACAAGCAAATATTTGCATTC
TCCGTTAGGCCTGTTACAAACTTTGATGAAATTACCTTCCACTTTCTTGAATGCATACATGACCACTTGCGGAATTCCAAGTTACAGAATCTCAAAGGCGATGGATCAAC
ACAGCTCCAAACCGCAGATTCAATTGTGAAGACTCCAGTGCAGAATGGCTCGAGTGGATATCATACAACATCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTA
AAAAGAGCTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATG
GAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAGAACTAATCATGACTTTATTA
GTTTCTTTTTTTTGGTTGCATTGCTATGCGATAGGTGTGGTTTAGACAGACATATACTGCTTTGCTTAAATTTAAGCATCTCTCTTTTACTTGCTTGTTACATGTGTATA
TGTATTTTGAAGCTTCTTTCTCCTAATTCTAATATTATTAGATTAAGCCTTAAGCACCAATCATATCCCAAACGATACACCAATTTTAACTTTTAACTTTGGTGATAGTT
GTTTTGTATAATAAAATATTAGTTGTTGATTATTTTTCATTATTCTA
Protein sequenceShow/hide protein sequence
MFSSTQFDSGSGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINDVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTKQMEEIQD
GMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFLECIHDHLRNSKLQNLKGDGSTQLQTADSIVKTPVQNGSSGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLP
SSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA