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Cmc04g0092221 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0092221
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase
Genome locationCMiso1.1chr04:4041236..4041709
RNA-Seq ExpressionCmc04g0092221
SyntenyCmc04g0092221
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038926.1 integrase [Cucumis melo var. makuwa]5.4e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

KAA0039947.1 integrase [Cucumis melo var. makuwa]5.4e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

KAA0060377.1 integrase [Cucumis melo var. makuwa]5.4e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

TYJ95504.1 integrase [Cucumis melo var. makuwa]5.4e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

TYK30104.1 integrase [Cucumis melo var. makuwa]5.4e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

TrEMBL top hitse value%identityAlignment
A0A5A7UZJ8 Integrase2.6e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

A0A5D3BQ81 Integrase2.6e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

A0A5D3CLV1 Integrase2.6e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

A0A5D3CXM6 Integrase2.6e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

A0A5D3E3T2 Integrase2.6e-5988.98Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ+NGV ERKNRTIMEMARSMLKAKNLPNEF GD VACTVYILNRAPTK +PGMTPY+AWCGEKPSVSHLRVF SIAYSHIPNQLR KLDD+SEKCIMV
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+SENSKAYRLYNPV +KIIISRDVI+
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.2e-2141.86Show/hide
Query:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRI--PGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKC
        +TPQ NGV ER  RTI E AR+M+    L   F G+ V    Y++NR P++ +     TPY+ W  +KP + HLRVF +  Y HI N+ + K DD+S K 
Subjt:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRI--PGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKC

Query:  IMVGHSENSKAYRLYNPVLKKIIISRDVI
        I VG+  N   ++L++ V +K I++RDV+
Subjt:  IMVGHSENSKAYRLYNPVLKKIIISRDVI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-2945.67Show/hide
Query:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV
        TPQ NGV ER NRTI+E  RSML+   LP  F G+ V    Y++NR+P+  +    P + W  ++ S SHL+VF   A++H+P + R KLDD+S  CI +
Subjt:  TPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIMV

Query:  GHSENSKAYRLYNPVLKKIIISRDVIY
        G+ +    YRL++PV KK+I SRDV++
Subjt:  GHSENSKAYRLYNPVLKKIIISRDVIY

P92512 Uncharacterized mitochondrial protein AtMg007105.0e-0737.65Show/hide
Query:  NRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEK
        NRTI+E  RSML    LP  F  D     V+I+N+ P+  I    P + W    P+ S+LR F  +AY H       KL  R++K
Subjt:  NRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.4e-1532.54Show/hide
Query:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIM
        +TP+ NG+ ERK+R I+E   ++L   ++P  +     A  VY++NR PT  +   +P++   G  P+   LRVF    Y  +    + KLDD+S +C+ 
Subjt:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIM

Query:  VGHSENSKAYRLYNPVLKKIIISRDV
        +G+S    AY   +    ++ ISR V
Subjt:  VGHSENSKAYRLYNPVLKKIIISRDV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.5e-1430.95Show/hide
Query:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIM
        +TP+ NG+ ERK+R I+EM  ++L   ++P  +     +  VY++NR PT  +   +P++   G+ P+   L+VF    Y  +    R KL+D+S++C  
Subjt:  NTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEKCIM

Query:  VGHSENSKAYRLYNPVLKKIIISRDV
        +G+S    AY   +    ++  SR V
Subjt:  VGHSENSKAYRLYNPVLKKIIISRDV

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0837.65Show/hide
Query:  NRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEK
        NRTI+E  RSML    LP  F  D     V+I+N+ P+  I    P + W    P+ S+LR F  +AY H       KL  R++K
Subjt:  NRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHIPNQLRDKLDDRSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTATGGTCGAGTTTTGGTATTTAGTAGTGACCTCAGCTTAGTCCGGAAAGTTGGGTTCTTACAAAATCACAGCTCGAATACTCCACAAAAAAATGGAGTTGTAGA
AAGAAAGAATAGAACAATCATGGAAATGGCGAGAAGTATGCTAAAAGCAAAAAATCTGCCAAACGAGTTTTGTGGAGATGTTGTTGCATGTACTGTTTACATTCTGAATC
GAGCTCCAACAAAGAGAATTCCAGGTATGACTCCTTATAAAGCATGGTGTGGTGAGAAACCATCTGTTAGTCATTTGAGAGTGTTTGAGAGTATAGCTTATTCTCATATT
CCAAATCAGCTAAGAGACAAGCTTGATGATAGATCTGAAAAATGTATTATGGTAGGTCATAGTGAAAATTCTAAAGCTTATCGATTGTATAATCCTGTGTTAAAAAAAAT
TATTATCAGCAGAGATGTGATATATTTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTATGGTCGAGTTTTGGTATTTAGTAGTGACCTCAGCTTAGTCCGGAAAGTTGGGTTCTTACAAAATCACAGCTCGAATACTCCACAAAAAAATGGAGTTGTAGA
AAGAAAGAATAGAACAATCATGGAAATGGCGAGAAGTATGCTAAAAGCAAAAAATCTGCCAAACGAGTTTTGTGGAGATGTTGTTGCATGTACTGTTTACATTCTGAATC
GAGCTCCAACAAAGAGAATTCCAGGTATGACTCCTTATAAAGCATGGTGTGGTGAGAAACCATCTGTTAGTCATTTGAGAGTGTTTGAGAGTATAGCTTATTCTCATATT
CCAAATCAGCTAAGAGACAAGCTTGATGATAGATCTGAAAAATGTATTATGGTAGGTCATAGTGAAAATTCTAAAGCTTATCGATTGTATAATCCTGTGTTAAAAAAAAT
TATTATCAGCAGAGATGTGATATATTTTCAATGA
Protein sequenceShow/hide protein sequence
MLYGRVLVFSSDLSLVRKVGFLQNHSSNTPQKNGVVERKNRTIMEMARSMLKAKNLPNEFCGDVVACTVYILNRAPTKRIPGMTPYKAWCGEKPSVSHLRVFESIAYSHI
PNQLRDKLDDRSEKCIMVGHSENSKAYRLYNPVLKKIIISRDVIYFQ