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Cmc04g0092231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0092231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase
Genome locationCMiso1.1chr04:4045854..4046285
RNA-Seq ExpressionCmc04g0092231
SyntenyCmc04g0092231
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039947.1 integrase [Cucumis melo var. makuwa]1.1e-6690.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

KAA0058949.1 integrase [Cucumis melo var. makuwa]6.4e-6790.85Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESVLFGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

KAA0060377.1 integrase [Cucumis melo var. makuwa]1.1e-6690.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

KAA0060690.1 integrase [Cucumis melo var. makuwa]8.3e-6790.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MKKEFEMSD+GLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

TYJ95504.1 integrase [Cucumis melo var. makuwa]1.1e-6690.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

TrEMBL top hitse value%identityAlignment
A0A5A7UZJ8 Integrase3.1e-6790.85Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESVLFGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

A0A5A7V047 Integrase4.0e-6790.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MKKEFEMSD+GLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

A0A5D3BQ81 Integrase5.3e-6790.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

A0A5D3CLV1 Integrase5.3e-6790.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

A0A5D3E3T2 Integrase5.3e-6790.14Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        MK EFEMSDMGLIHYFLGIEVNQNEGEI +SQQKYAHDLLKKFRMENA PCNT MDANLKLC+DDIGEAVDPSLYRSLVG+LMYL ATRPDILF VSMLS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        +FMTNPKRS WEA +RVLRYILGTINFGIYYKKVSESV+FGF
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.4e-1633.78Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDA--NLKLCQDDIGEAVDPSLYRSLVGNLMY-LIATRPDILFTVS
        + ++F M+D+  I +F+GI +   E +I++SQ  Y   +L KF MEN    +T + +  N +L   D  +   P   RSL+G LMY ++ TRPD+   V+
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDA--NLKLCQDDIGEAVDPSLYRSLVGNLMY-LIATRPDILFTVS

Query:  MLSKFMTNPKRSPWEASQRVLRYILGTINFGIYYKK--VSESVLFGFL
        +LS++ +      W+  +RVLRY+ GTI+  + +KK    E+ + G++
Subjt:  MLSKFMTNPKRSPWEASQRVLRYILGTINFGIYYKK--VSESVLFGFL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-1736.09Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEV--NQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKL----CQDDIGEAVDPSL--YRSLVGNLMY-LIATRPD
        + K F+M D+G     LG+++   +   ++++SQ+KY   +L++F M+NA P +T +  +LKL    C   + E  + +   Y S VG+LMY ++ TRPD
Subjt:  MKKEFEMSDMGLIHYFLGIEV--NQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKL----CQDDIGEAVDPSL--YRSLVGNLMY-LIATRPD

Query:  ILFTVSMLSKFMTNPKRSPWEASQRVLRYILGT
        I   V ++S+F+ NP +  WEA + +LRY+ GT
Subjt:  ILFTVSMLSKFMTNPKRSPWEASQRVLRYILGT

P92519 Uncharacterized mitochondrial protein AtMg008101.0e-1937.5Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        +   F M D+G +HYFLGI++  +   +F+SQ KYA  +L    M +  P +T +   L        +  DPS +RS+VG L YL  TRPDI + V+++ 
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSE
        + M  P  + ++  +RVLRY+ GTI  G+Y  K S+
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.6e-2040.6Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        + + F + D   +HYFLGIE  +    + +SQ++Y  DLL +  M  A P  T M  + KL      +  DP+ YR +VG+L YL  TRPDI + V+ LS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKK
        +FM  P     +A +R+LRY+ GT N GI+ KK
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.1e-2039.1Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        + + F + +   +HYFLGIE  +    + +SQ++Y  DLL +  M  A P  T M  + KL      +  DP+ YR +VG+L YL  TRPD+ + V+ LS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKK
        ++M  P    W A +RVLRY+ GT + GI+ KK
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.3e-2136.69Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        +K  F++ D+G + YFLG+E+ ++   I + Q+KYA DLL +  +    P +  MD ++       G+ VD   YR L+G LMYL  TR DI F V+ LS
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVL
        +F   P+ +  +A  ++L YI GT+  G++Y   +E  L
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVL

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.8e-0638.33Show/hide
Query:  MYLIATRPDILFTVSMLSKFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF
        MYL  TRPD+ F V+ LS+F +  + +  +A  +VL Y+ GT+  G++Y   S+  L  F
Subjt:  MYLIATRPDILFTVSMLSKFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSESVLFGF

ATMG00810.1 DNA/RNA polymerases superfamily protein7.4e-2137.5Show/hide
Query:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS
        +   F M D+G +HYFLGI++  +   +F+SQ KYA  +L    M +  P +T +   L        +  DPS +RS+VG L YL  TRPDI + V+++ 
Subjt:  MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLS

Query:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSE
        + M  P  + ++  +RVLRY+ GTI  G+Y  K S+
Subjt:  KFMTNPKRSPWEASQRVLRYILGTINFGIYYKKVSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGGAATTCGAGATGAGTGATATGGGTCTCATCCACTATTTTCTCGGAATTGAGGTTAATCAAAATGAAGGAGAAATTTTCGTTTCACAACAAAAGTATGCTCA
TGATTTACTAAAAAAATTCCGGATGGAAAATGCTTTACCTTGCAACACTCTCATGGATGCAAATTTGAAATTGTGCCAGGATGATATTGGAGAAGCAGTCGATCCAAGTT
TGTATCGAAGCTTAGTTGGAAACTTAATGTACTTAATAGCAACAAGACCTGATATTTTATTTACTGTAAGTATGTTAAGCAAATTTATGACAAACCCAAAAAGAAGTCCT
TGGGAAGCAAGTCAAAGAGTTCTTCGTTACATTCTTGGCACCATTAATTTTGGAATTTATTACAAGAAAGTTTCAGAATCAGTGTTGTTTGGTTTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGGAATTCGAGATGAGTGATATGGGTCTCATCCACTATTTTCTCGGAATTGAGGTTAATCAAAATGAAGGAGAAATTTTCGTTTCACAACAAAAGTATGCTCA
TGATTTACTAAAAAAATTCCGGATGGAAAATGCTTTACCTTGCAACACTCTCATGGATGCAAATTTGAAATTGTGCCAGGATGATATTGGAGAAGCAGTCGATCCAAGTT
TGTATCGAAGCTTAGTTGGAAACTTAATGTACTTAATAGCAACAAGACCTGATATTTTATTTACTGTAAGTATGTTAAGCAAATTTATGACAAACCCAAAAAGAAGTCCT
TGGGAAGCAAGTCAAAGAGTTCTTCGTTACATTCTTGGCACCATTAATTTTGGAATTTATTACAAGAAAGTTTCAGAATCAGTGTTGTTTGGTTTTTTGTGA
Protein sequenceShow/hide protein sequence
MKKEFEMSDMGLIHYFLGIEVNQNEGEIFVSQQKYAHDLLKKFRMENALPCNTLMDANLKLCQDDIGEAVDPSLYRSLVGNLMYLIATRPDILFTVSMLSKFMTNPKRSP
WEASQRVLRYILGTINFGIYYKKVSESVLFGFL