; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0092491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0092491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:4440465..4441361
RNA-Seq ExpressionCmc04g0092491
SyntenyCmc04g0092491
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.1e-15191.53Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEY+AAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK
        LRN+LKTVGILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVF+N    L   +KKK
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK

KAA0063204.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.3e-15898.94Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY KGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN
        LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVFDN
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN

TYJ98172.1 putative copia-type polyprotein [Cucumis melo var. makuwa]2.1e-15291.61Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKV KRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKKKHV
        LRN+LKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHID RFHFIRDCIS+KEVQVEYVKTEDQIADIFTK LKVNVF+N    L   +KKKKHV
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKKKHV

TYK03241.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-15091.86Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK
        LRN+LKTVGILQ+DPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVF+N    L   + KK
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK

TYK23489.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]7.3e-15898.94Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY KGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN
        LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVFDN
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN

TrEMBL top hitse value%identityAlignment
A0A5A7UMQ1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-15191.53Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEY+AAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK
        LRN+LKTVGILQ+DPTVIH+DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVF+N    L   +KKK
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK

A0A5A7V7K9 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-15898.94Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY KGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN
        LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVFDN
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN

A0A5D3BEI7 Putative copia-type polyprotein1.0e-15291.61Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKV KRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKKKHV
        LRN+LKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHID RFHFIRDCIS+KEVQVEYVKTEDQIADIFTK LKVNVF+N    L   +KKKKHV
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKKKHV

A0A5D3BU42 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-15191.86Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIF SQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFK LVGSLRYLTCTRP+ILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY +G L+Y LFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGN AFTWSSK QPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK
        LRN+LKTVGILQ+DPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVF+N    L   + KK
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKK

A0A5D3DJS1 Retrovirus-related pol polyprotein from transposon tnt 1-943.6e-15898.94Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        MTQEFEMTDIGLMSYYLGIEVKQ EEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        RFMESPTTTHLKVAKRILRY KGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN
        LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTK LKVNVFDN
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.4e-5037.14Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRY-LTCTRPNILFSVGLV
        + ++F MTD+  + +++GI ++  E+ I+ SQ  Y ++IL KFNM N   V+TP+ +          +D + +  + L+G L Y + CTRP++  +V ++
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRY-LTCTRPNILFSVGLV

Query:  SRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEF--KLEGYCDSDWAGDTNDRKSTSGYVFFIGNI-AFTWSSKNQPIVTLSTCEAEYVAAASCVC
        SR+     +   +  KR+LRY KG ++ +L +  +  F  K+ GY DSDWAG   DRKST+GY+F + +     W++K Q  V  S+ EAEY+A    V 
Subjt:  SRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEF--KLEGYCDSDWAGDTNDRKSTSGYVFFIGNI-AFTWSSKNQPIVTLSTCEAEYVAAASCVC

Query:  HAVWLRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTL
         A+WL+ +L ++ I  ++P  I+ DN+  I++A NP  H R+KHID ++HF R+ +    + +EY+ TE+Q+ADIFTK L
Subjt:  HAVWLRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.6e-5238.83Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEV--KQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKH------EEGDDVDPSYFKYLVGSLRY-LTCTRPN
        +++ F+M D+G     LG+++  ++    ++ SQE+Y   +LE+FNM N+KPV+TP+    KLSK       EE  ++    +   VGSL Y + CTRP+
Subjt:  MTQEFEMTDIGLMSYYLGIEV--KQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKH------EEGDDVDPSYFKYLVGSLRY-LTCTRPN

Query:  ILFSVGLVSRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAA
        I  +VG+VSRF+E+P   H +  K ILRY +G     L +  S    L+GY D+D AGD ++RKS++GY+F     A +W SK Q  V LST EAEY+AA
Subjt:  ILFSVGLVSRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAA

Query:  ASCVCHAVWLRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFD
               +WL+  L+ +G+ Q +  V++ D++S I L+KN ++H R+KHID R+H+IR+ +  + ++V  + T +  AD+ TK +  N F+
Subjt:  ASCVCHAVWLRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFD

P92519 Uncharacterized mitochondrial protein AtMg008108.7e-3738Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        ++  F M D+G + Y+LGI++K    G+F SQ +Y  +IL    M++ KP++TP+      S        DPS F+ +VG+L+YLT TRP+I ++V +V 
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        + M  PT     + KR+LRY KG + + L+   + +  ++ +CDSDWAG T+ R+ST+G+  F+G    +WS+K QP V+ S+ E EY A A       W
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-5740.64Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        ++Q F + D   + Y+LGIE K++  G+  SQ RY  ++L + NM+ +KPV TP+    KLS +      DP+ ++ +VGSL+YL  TRP+I ++V  +S
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        +FM  PT  HL+  KRILRY  G  N+ +F        L  Y D+DWAGD +D  ST+GY+ ++G+   +WSSK Q  V  S+ EAEY + A+      W
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN
        + ++L  +GI    P VI+ DN     L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TK L    F N
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.1e-5840.42Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        ++Q F + +   + Y+LGIE K++ +G+  SQ RYT ++L + NM+ +KPVATP+ T  KL+ H      DP+ ++ +VGSL+YL  TRP++ ++V  +S
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        ++M  PT  H    KR+LRY  G  ++ +F        L  Y D+DWAGDT+D  ST+GY+ ++G+   +WSSK Q  V  S+ EAEY + A+      W
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW

Query:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFS
        + ++L  +GI    P VI+ DN     L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TK L    F  QNFS
Subjt:  LRNMLKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.2e-4534.55Show/hide
Query:  FEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVSRFME
        F++ D+G + Y+LG+E+ +   GI   Q +Y  ++L++  ++  KP + P++     S H  GD VD   ++ L+G L YL  TR +I F+V  +S+F E
Subjt:  FEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVSRFME

Query:  SPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVWLRNM
        +P   H +   +IL Y KG +   LFYSS  E +L+ + D+ +    + R+ST+GY  F+G    +W SK Q +V+ S+ EAEY A +      +WL   
Subjt:  SPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVWLRNM

Query:  LKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRD
         + + +    PT++  DN + I +A N VFH+R+KHI++  H +R+
Subjt:  LKTVGILQDDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRD

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.8e-1136.36Show/hide
Query:  YLTCTRPNILFSVGLVSRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGY
        YLT TRP++ F+V  +S+F  +  T  ++   ++L Y KG +   LFYS++ + +L+ + DSDWA   + R+S +G+
Subjt:  YLTCTRPNILFSVGLVSRFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein6.2e-3838Show/hide
Query:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS
        ++  F M D+G + Y+LGI++K    G+F SQ +Y  +IL    M++ KP++TP+      S        DPS F+ +VG+L+YLT TRP+I ++V +V 
Subjt:  MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVS

Query:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW
        + M  PT     + KR+LRY KG + + L+   + +  ++ +CDSDWAG T+ R+ST+G+  F+G    +WS+K QP V+ S+ E EY A A       W
Subjt:  RFMESPTTTHLKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTTAGAGGAAGGAATTTTCTTCTCTCAAGAACGATATACTAG
AGAAATTCTAGAGAAGTTTAATATGATGAATTCTAAGCCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGATCCTTCAT
ATTTCAAATATTTGGTTGGGAGTTTAAGATATTTGACTTGCACACGACCAAATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCAT
TTGAAAGTGGCAAAGAGAATTCTTCGTTACTTCAAAGGTATGCTTAACTATGAGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTCGAAGGCTATTGTGATAGTGACTG
GGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATATTGCATTTACATGGAGTTCTAAGAATCAACCTATTGTGACATTATCCACTT
GTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTGTCATGCAGTTTGGTTAAGAAATATGTTAAAGACAGTTGGAATTTTGCAAGATGATCCAACTGTGATTCATGTA
GACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAGGT
TCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGACACTCAAAGTTAATGTGTTTGACAACCAGAACTTTTCTTTGAGTTTTTCAAAAAAAA
AAAAAAAACATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTTAGAGGAAGGAATTTTCTTCTCTCAAGAACGATATACTAG
AGAAATTCTAGAGAAGTTTAATATGATGAATTCTAAGCCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGATCCTTCAT
ATTTCAAATATTTGGTTGGGAGTTTAAGATATTTGACTTGCACACGACCAAATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCAT
TTGAAAGTGGCAAAGAGAATTCTTCGTTACTTCAAAGGTATGCTTAACTATGAGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTCGAAGGCTATTGTGATAGTGACTG
GGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATATTGCATTTACATGGAGTTCTAAGAATCAACCTATTGTGACATTATCCACTT
GTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTGTCATGCAGTTTGGTTAAGAAATATGTTAAAGACAGTTGGAATTTTGCAAGATGATCCAACTGTGATTCATGTA
GACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAGGT
TCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGACACTCAAAGTTAATGTGTTTGACAACCAGAACTTTTCTTTGAGTTTTTCAAAAAAAA
AAAAAAAACATGTTTAA
Protein sequenceShow/hide protein sequence
MTQEFEMTDIGLMSYYLGIEVKQLEEGIFFSQERYTREILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKYLVGSLRYLTCTRPNILFSVGLVSRFMESPTTTH
LKVAKRILRYFKGMLNYELFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNIAFTWSSKNQPIVTLSTCEAEYVAAASCVCHAVWLRNMLKTVGILQDDPTVIHV
DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKTLKVNVFDNQNFSLSFSKKKKKHV