; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0092551 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0092551
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr04:4532779..4533018
RNA-Seq ExpressionCmc04g0092551
SyntenyCmc04g0092551
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049632.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        MKKND SMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGAT+FSKIDL S YHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

KAA0061127.1 pol protein [Cucumis melo var. makuwa]1.2e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

KAA0063198.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-3597.47Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT
        +KKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIRDSDIPKTAFVTPRSKFSPLT
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT

TYK03797.1 pol protein [Cucumis melo var. makuwa]1.2e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

TYK09586.1 pol protein [Cucumis melo var. makuwa]4.7e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIR+SDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

TrEMBL top hitse value%identityAlignment
A0A5A7U1I4 DNA/RNA polymerases superfamily protein1.7e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        MKKND SMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGAT+FSKIDL S YHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

A0A5A7V2M6 Pol protein5.9e-2892.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

A0A5A7V6F2 Gag protease polyprotein7.7e-3697.47Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT
        +KKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIRDSDIPKTAFVTPRSKFSPLT
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT

A0A5D3BWB9 Pol protein5.9e-2892.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRDSDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

A0A5D3CGU1 Pol protein2.3e-2792.65Show/hide
Query:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF
        +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIR+SDIPKTAF
Subjt:  MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAF

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein2.3e-1346.05Show/hide
Query:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPL
        K + ++R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL S+YH +R+R  D  K AF  PR  F  L
Subjt:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPL

P31843 RNA-directed DNA polymerase homolog9.1e-1859.42Show/hide
Query:  SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF
        S+R+CIDYR L KVT+KN+YP+PR+DDLFD+L  AT F+K+DL S Y Q+RI   D PKT  VT    F
Subjt:  SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.7e-1752.05Show/hide
Query:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF
        K D + RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DLHS YHQ+ +   D  KTAFVTP  K+
Subjt:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.7e-1752.05Show/hide
Query:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF
        K D + RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DLHS YHQ+ +   D  KTAFVTP  K+
Subjt:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKF

Q9UR07 Transposon Tf2-11 polyprotein2.3e-1346.05Show/hide
Query:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPL
        K + ++R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL S+YH +R+R  D  K AF  PR  F  L
Subjt:  KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAATGATAGATCGATGCGCCTTTGCATTGATTACAGAGAGTTGAATAAGGTGACAGTCAAGAATCGCTATCCATTGCCCAGGATTGATGACTTGTTTGATCA
GTTGCAAGGAGCCACTATTTTCTCTAAGATCGATTTACATTCAAGCTATCACCAGTTGAGGATTAGAGACAGTGACATTCCTAAGACTGCTTTTGTCACACCCCGATCTA
AGTTTTCCCCTCTAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAATGATAGATCGATGCGCCTTTGCATTGATTACAGAGAGTTGAATAAGGTGACAGTCAAGAATCGCTATCCATTGCCCAGGATTGATGACTTGTTTGATCA
GTTGCAAGGAGCCACTATTTTCTCTAAGATCGATTTACATTCAAGCTATCACCAGTTGAGGATTAGAGACAGTGACATTCCTAAGACTGCTTTTGTCACACCCCGATCTA
AGTTTTCCCCTCTAACCTAG
Protein sequenceShow/hide protein sequence
MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT