CuGenDBv2

Gene ID	Cmc04g0092791
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr04:4757255..4757587
RNA-Seq Expression	Cmc04g0092791
Synteny	Cmc04g0092791
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-50

91.82

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]

2.7e-49

90.91

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQT+KDSRKSTS SVFTLNGGAI+WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-50

91.82

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-50

91.82

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

9.3e-50

90.91

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLN GA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKM4 Gag/pol protein

5.3e-51

91.82

Show/hide

Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

A0A5A7TZD0 Gag/pol protein

5.3e-51

91.82

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

A0A5A7UYE8 Gag/pol protein

5.3e-51

91.82

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLNGGA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

A0A5A7V1F5 Gag/pol protein

4.5e-50

90.91

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Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQTDKDSRKSTSGSVFTLN GA++WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

A0A5D3CZY3 Gag/pol protein

1.3e-49

90.91

Show/hide

Query:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        MLVYGAKDLIL GYTDSDFQT+KDSRKSTS SVFTLNGGAI+WRSIKQGCIADSTME EYVAACEAAK+A+WLRKFLHDLEV  NMNL ITLYCDNSGAV
Subjt:  MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Query:  ANSKEPRSHK
        ANSKEPRSHK
Subjt:  ANSKEPRSHK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.2e-11

34.65

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Query:  LIGYTDSDFQTDKDSRKSTSGSVFTL-NGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAVANSKEPRSH
        +IGY DSD+   +  RKST+G +F + +   I W + +Q  +A S+ E EY+A  EA ++A+WL+  L    +++ +   I +Y DN G ++ +  P  H
Subjt:  LIGYTDSDFQTDKDSRKSTSGSVFTL-NGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAVANSKEPRSH

Query:  K
        K
Subjt:  K

P0CV72 Secreted RxLR effector protein 161

3.6e-12

52.38

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Query:  LIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWL
        L+GY+D+D+  D +SR+STSG +F LNGG + WRS KQ  +A S+ E EY+A  EA ++A+WL
Subjt:  LIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-19

45.37

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Query:  LVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAVA
        L +G  D IL GYTD+D   D D+RKS++G +FT +GGAI W+S  Q C+A ST E EY+AA E  K+ IWL++FL +L +         +YCD+  A+ 
Subjt:  LVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAVA

Query:  NSKEPRSH
         SK    H
Subjt:  NSKEPRSH

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.5e-10

35.63

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Query:  YTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV
        ++D+ FQ+ KD+R+ST+G    L    I W+S KQ  ++ S+ E EY A   A  + +WL +F  +L++ L+      L+CDN+ A+
Subjt:  YTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAV

Sequences

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CDS sequence

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ATGCTTGTGTATGGAGCTAAGGATTTGATCCTTATAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGGGATCAGTGTTCACC
CTAAATGGAGGAGCTATAATATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGTTGAATACGTCGCTGCTTGTGAAGCAGCAAAAAAAGCA
ATTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGATCTAAACATGAACTTGTCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAA
CCTCGCAGCCATAAATGA

mRNA sequence

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Protein sequence

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MLVYGAKDLILIGYTDSDFQTDKDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEVEYVAACEAAKKAIWLRKFLHDLEVDLNMNLSITLYCDNSGAVANSKE
PRSHK

Cmc04g0092791 (gene) of Melon (Charmono) v1.1 genome