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Cmc04g0092991 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0092991
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:4982996..4983490
RNA-Seq ExpressionCmc04g0092991
SyntenyCmc04g0092991
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0052923 - all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041593.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-6481.76Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTPTLVGYCDADWAGSADDRK+                            EAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
        KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL

KAA0055610.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.7e-7991.46Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTP LVGYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLST EAEYIAAGSG TQLIWMKNMLHEYGFD+DTMTLYCD+ SAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT
        KN VQHSRTKHIDIRHHFIRELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYLRAGLGVC T
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT

KAA0056181.1 uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa]2.5e-6789.12Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEYIAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL
        KNLVQHSRTK+IDIRHHFIRELVEDKVIK DHIRSNLQL DIFT PL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL

TYK03343.1 uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa]2.5e-6789.12Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEYIAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL
        KNLVQHSRTK+IDIRHHFIRELVEDKVIK DHIRSNLQL DIFT PL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL

TYK23188.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-6285.42Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTPTLVGYCDADWAG ADDRKSTSGGCF LGNNLI  LSKKQN +SLST EAEYI AGSG TQLIWM+N+L EYGFD+ T+TLY D+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFT
        KN VQHSR KHIDIRHHFIRELVEDKVI+ DHIRSNLQLADIFT
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFT

TrEMBL top hitse value%identityAlignment
A0A5A7URM6 Reverse transcriptase Ty1/copia-type domain-containing protein1.2e-6789.12Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEYIAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL
        KNLVQHSRTK+IDIRHHFIRELVEDKVIK DHIRSNLQL DIFT PL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL

A0A5D3BUJ1 Reverse transcriptase Ty1/copia-type domain-containing protein1.2e-6789.12Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEYIAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL
        KNLVQHSRTK+IDIRHHFIRELVEDKVIK DHIRSNLQL DIFT PL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPL

A0A5D3D7Z9 Putative mitochondrial protein5.7e-6581.76Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTPTLVGYCDADWAGSADDRK+                            EAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
        KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL

A0A5D3DI97 Gag-pol polyprotein9.0e-6385.42Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTPTLVGYCDADWAG ADDRKSTSGGCF LGNNLI  LSKKQN +SLST EAEYI AGSG TQLIWM+N+L EYGFD+ T+TLY D+MSAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFT
        KN VQHSR KHIDIRHHFIRELVEDKVI+ DHIRSNLQLADIFT
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFT

A0A5D3DLL1 Gag-pol polyprotein1.8e-7991.46Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS
        MMYSYDTTP LVGYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLST EAEYIAAGSG TQLIWMKNMLHEYGFD+DTMTLYCD+ SAIDIS
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDIS

Query:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT
        KN VQHSRTKHIDIRHHFIRELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYLRAGLGVC T
Subjt:  KNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.9e-2643.14Show/hide
Query:  LVGYCDADWAGSADDRKSTSGGCF-LLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQHSR
        ++GY D+DWAGS  DRKST+G  F +   NLI   +K+QN ++ S+ EAEY+A      + +W+K +L        + + +Y D+   I I+ N   H R
Subjt:  LVGYCDADWAGSADDRKSTSGGCF-LLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQHSR

Query:  TKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV
         KHIDI++HF RE V++ VI  ++I +  QLADIFTKPL A+ F  LR  LG+
Subjt:  TKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV

P0CV72 Secreted RxLR effector protein 1611.1e-0945.45Show/hide
Query:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWM
        T  LVGY DADWAG  + R+STSG  F L    +S  SKKQ  ++LS+ E EY+A      + +W+
Subjt:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-3246.41Show/hide
Query:  PTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSR
        P L GY DAD AG  D+RKS++G  F      IS  SK Q  ++LST EAEYIAA     ++IW+K  L E G  +    +YCDS SAID+SKN + H+R
Subjt:  PTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSR

Query:  TKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV
        TKHID+R+H+IRE+V+D+ +K   I +N   AD+ TK +  + FE  +  +G+
Subjt:  TKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.7e-2339.35Show/hide
Query:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQH
        T +L  Y DADWAG  DD  ST+G    LG++ IS  SKKQ  +  S+ EAEY +  +  +++ W+ ++L E G        +YCD++ A  +  N V H
Subjt:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQH

Query:  SRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV
        SR KHI I +HFIR  V+   ++  H+ ++ QLAD  TKPL  ++F+   + +GV
Subjt:  SRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.8e-2339.35Show/hide
Query:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQH
        T +L  Y DADWAG  DD  ST+G    LG++ IS  SKKQ  +  S+ EAEY +  +  ++L W+ ++L E G        +YCD++ A  +  N V H
Subjt:  TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQH

Query:  SRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV
        SR KHI + +HFIR  V+   ++  H+ ++ QLAD  TKPL   +F+     +GV
Subjt:  SRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.7e-1739.34Show/hide
Query:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMT-LYCDSMSAIDI
        + YS      L  + DA +    D R+ST+G C  LG +LIS  SKKQ  +S S+AEAEY A      +++W+     E        T L+CD+ +AI I
Subjt:  MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMT-LYCDSMSAIDI

Query:  SKNLVQHSRTKHIDIRHHFIRE
        + N V H RTKHI+   H +RE
Subjt:  SKNLVQHSRTKHIDIRHHFIRE

ATMG00810.1 DNA/RNA polymerases superfamily protein2.8e-0844.07Show/hide
Query:  YCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIW
        +CD+DWAG    R+ST+G C  LG N+IS  +K+Q  +S S+ E EY A      +L W
Subjt:  YCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCGTAAAAGTACGTCTGGAGGTTGCTTCCTTTTGGG
AAACAATTTAATCTCTTGTTTAAGTAAGAAGCAAAACTTTATTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTATACACAATTGATTTGGATGA
AAAACATGCTGCATGAATATGGCTTTGATCGGGATACTATGACGTTGTATTGTGACAGTATGAGTGCAATTGATATATCTAAAAATCTCGTTCAACATAGTCGAACTAAG
CATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATCAAGCATGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCT
GGACGCAAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTTGCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCGTAAAAGTACGTCTGGAGGTTGCTTCCTTTTGGG
AAACAATTTAATCTCTTGTTTAAGTAAGAAGCAAAACTTTATTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTATACACAATTGATTTGGATGA
AAAACATGCTGCATGAATATGGCTTTGATCGGGATACTATGACGTTGTATTGTGACAGTATGAGTGCAATTGATATATCTAAAAATCTCGTTCAACATAGTCGAACTAAG
CATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATCAAGCATGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCT
GGACGCAAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTTGCACTTAA
Protein sequenceShow/hide protein sequence
MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTK
HIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT