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Cmc04g0093071 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0093071
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein RADIALIS-like 3
Genome locationCMiso1.1chr04:5088284..5089449
RNA-Seq ExpressionCmc04g0093071
SyntenyCmc04g0093071
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.0e-4497.87Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]1.6e-4298.85Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]4.8e-3984.21Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]1.3e-3681.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]1.1e-4392.55Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGS+WTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPA RGFCF+D+EQRMRSL+L+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein4.9e-4597.87Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRS PAARGF FLDQEQRMRSLQLN
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

A0A1S3CPA0 protein RADIALIS-like 37.8e-4398.85Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

A0A5D3D7Z0 Protein RADIALIS-like 37.8e-4398.85Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQR

A0A6J1CC55 protein RADIALIS-like 32.3e-3984.21Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        MGS GSNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKIETGQVPFPNYR+S    RGFCF+D+E+RMRSL+L+
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

A0A6J1FM85 protein RADIALIS-like 36.4e-3781.91Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.2e-2863.74Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q1A173 Protein RADIALIS-like 63.9e-2357.3Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q58FS3 Transcription factor RADIALIS4.1e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G   +       E+R R+L++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Q6NNN0 Protein RADIALIS-like 36.0e-2465.75Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG
        M S ++WT K+NK+FE ALA YD+DTP+RW N+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSG

Q9SIJ5 Protein RADIALIS-like 27.0e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.8e-2367.14Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RWQN+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 61.0e-2371.21Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 62.7e-2457.3Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+     +R     D  ++M++L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

AT2G21650.1 Homeodomain-like superfamily protein5.0e-2658.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+ +   +      D+E+RMRS++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL

AT4G39250.1 RAD-like 13.7e-2963.74Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL
        S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     +E+RMR+++L
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAATGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCAAGAGCCGT
CGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGAC
CTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGTCTACAATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
AGGCAAATAAGGTCGAAGTTGAACCCACTTGCCCATAAAATTCGGTTTGTGTAATTAGAATTAGTATTTAAGGAAACCATCAGAAAATGGCAGCAAAAAAGAGAGAGAAA
ATTTGAGAGTGTGTAGGAGGGGGAGTTGTGATTTTGATTTGATTTTATTTTTTAAGGAGGATGGGGTCTGGATCCAATTGGACGGCGAAACAGAACAAAGTGTTTGAAAA
TGCATTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCAAGAGCCGTCGGGGGCAAGACGGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTG
AAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGGACCTGCCGCCAGGGGATTTTGCTTTCTTGACCAAGAACAGAGGATGAGGAGT
CTACAATTGAATTGAAGTAGGAATGTGGGAAAGACCAGAGTTCTATATTTCTATCTCTCCATTAACTTTTTCTCCACCTAAATTTCCAACCAACAAATATTTATGAAATA
ATGTAGCTTACGTAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTATCTTTTATCAACTCTCCTCCAAATTTGTTTTATATTAAATAAATACCCTT
TAATATAGTTTAAAACACATAAAATTGGAGGAAAGGATCACCGGGGTTGAGTTTACTATGTTGTTGAACTCCAAATAATATTAATAAAAAATAAATCAAT
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAARGFCFLDQEQRMRSLQLN