; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0093411 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0093411
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr04:5561909..5562313
RNA-Seq ExpressionCmc04g0093411
SyntenyCmc04g0093411
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036856.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-4769.92Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        MIGSLLYL  S+PDIAY VG+C R+QS+ R S L  VKR+IKYVHGT+DFG+ YSYDT+  LVGYC  DW     DRK T GGCFFLGNN++SWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI
        CV  S VEAEYI  GSG TQ++WMK MLNEYGI
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI

KAA0036888.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.9e-4769.4Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +IGSLLYL TS+PDIAYA+G+C R+Q++ R S L  VKRI+KYVHGTSDFG+ YSYDT SILVGYCD DW   S+DRKST GGCF LGNNLISWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
        CV  S  E EY+ A S  TQL+WMK ML+E   Q
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

KAA0037649.1 uncharacterized protein E6C27_scaffold277G003120 [Cucumis melo var. makuwa]3.9e-5070.68Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        MIGSLLYL+ S+PDIAYA+ +C R+QS+ R+S L  VKRIIKYVHGT+DFG+ Y YDT+S LVGYCD DWP  ++D+KST GGCFFLGNNL+SWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI
        C+  S  EAEYI  GSG TQ++WMK MLNEYGI
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI

KAA0055610.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-4768.18Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++GSLLYL  S+P+IAY VG+C  +Q++ R++ L  VKRI+KYVHGTSDFG+ YSYDT   LVGYCD DW   ++DRKST GGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYG
        CV  S  EAEYI AGSG TQL+WMK ML+EYG
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYG

TYJ96683.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.9e-4769.4Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +IGSLLYL TS+PDIAYA+G+C R+Q++ R S L  VKRI+KYVHGTSDFG+ YSYDT SILVGYCD DW   S+DRKST GGCF LGNNLISWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
        CV  S  E EY+ A S  TQL+WMK ML+E   Q
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

TrEMBL top hitse value%identityAlignment
A0A5A7T284 Putative mitochondrial protein3.3e-4769.4Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +IGSLLYL TS+PDIAYA+G+C R+Q++ R S L  VKRI+KYVHGTSDFG+ YSYDT SILVGYCD DW   S+DRKST GGCF LGNNLISWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
        CV  S  E EY+ A S  TQL+WMK ML+E   Q
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

A0A5D3B7L1 Gag-pol polyprotein5.1e-4869.92Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        MIGSLLYL  S+PDIAY VG+C R+QS+ R S L  VKR+IKYVHGT+DFG+ YSYDT+  LVGYC  DW     DRK T GGCFFLGNN++SWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI
        CV  S VEAEYI  GSG TQ++WMK MLNEYGI
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI

A0A5D3BBJ2 Putative mitochondrial protein3.3e-4769.4Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +IGSLLYL TS+PDIAYA+G+C R+Q++ R S L  VKRI+KYVHGTSDFG+ YSYDT SILVGYCD DW   S+DRKST GGCF LGNNLISWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
        CV  S  E EY+ A S  TQL+WMK ML+E   Q
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

A0A5D3DGP4 Uncharacterized protein1.9e-5070.68Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        MIGSLLYL+ S+PDIAYA+ +C R+QS+ R+S L  VKRIIKYVHGT+DFG+ Y YDT+S LVGYCD DWP  ++D+KST GGCFFLGNNL+SWFSKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI
        C+  S  EAEYI  GSG TQ++WMK MLNEYGI
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI

A0A5D3DLL1 Gag-pol polyprotein1.1e-4768.18Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++GSLLYL  S+P+IAY VG+C  +Q++ R++ L  VKRI+KYVHGTSDFG+ YSYDT   LVGYCD DW   ++DRKST GGCFFLGNNLISW SKKQN
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYG
        CV  S  EAEYI AGSG TQL+WMK ML+EYG
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYG

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-1634.06Show/hide
Query:  MIGSLLYLM-TSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDT--NSILVGYCDVDWPSCSEDRKSTLGGCFFLGN-NLISWFS
        +IG L+Y+M  ++PD+  AV +  R+ S +   L   +KR+++Y+ GT D  + +  +    + ++GY D DW     DRKST G  F + + NLI W +
Subjt:  MIGSLLYLM-TSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDT--NSILVGYCDVDWPSCSEDRKSTLGGCFFLGN-NLISWFS

Query:  KKQNCVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
        K+QN V +S  EAEY+       + +W+K +L    I+
Subjt:  KKQNCVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.0e-1839.1Show/hide
Query:  IGSLLYLMT-SKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +GSL+Y M  ++PDIA+AVG+  RF  N        VK I++Y+ GT+   + +   ++ IL GY D D     ++RKS+ G  F      ISW SK Q 
Subjt:  IGSLLYLMT-SKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI
        CV  S  EAEYI A     +++W+K+ L E G+
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGI

P92519 Uncharacterized mitochondrial protein AtMg008107.0e-1834.96Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++G+L YL  ++PDI+YAV +  +      ++   ++KR+++YV GT   G++   ++   +  +CD DW  C+  R+ST G C FLG N+ISW +K+Q 
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMW
         V  S  E EY        +L W
Subjt:  CVCSSRVEAEYIVAGSGYTQLMW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-1837.31Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++GSL YL  ++PDI+YAV    +F        L  +KRI++Y+ GT + G+F        L  Y D DW    +D  ST G   +LG++ ISW SKKQ 
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
         V  S  EAEY    +  +++ W+  +L E GI+
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.8e-1836.57Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++GSL YL  ++PD++YAV    ++           +KR+++Y+ GT D G+F        L  Y D DW   ++D  ST G   +LG++ ISW SKKQ 
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ
         V  S  EAEY    +  ++L W+  +L E GIQ
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNEYGIQ

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 86.9e-2138.46Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        +IG L+YL  ++ DI++AV    +F    R++    V +I+ Y+ GT   G+FYS      L  + D  + SC + R+ST G C FLG +LISW SKKQ 
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNE
         V  S  EAEY        ++MW+ Q   E
Subjt:  CVCSSRVEAEYIVAGSGYTQLMWMKQMLNE

ATMG00240.1 Gag-Pol-related retrotransposon family protein8.5e-1136.36Show/hide
Query:  LYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGC-----FFLG
        +YL  ++PD+ +AV    +F S SR + +  V +++ YV GT   G+FYS  ++  L  + D DW SC + R+S  G C     +FLG
Subjt:  LYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGC-----FFLG

ATMG00810.1 DNA/RNA polymerases superfamily protein4.9e-1934.96Show/hide
Query:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN
        ++G+L YL  ++PDI+YAV +  +      ++   ++KR+++YV GT   G++   ++   +  +CD DW  C+  R+ST G C FLG N+ISW +K+Q 
Subjt:  MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQN

Query:  CVCSSRVEAEYIVAGSGYTQLMW
         V  S  E EY        +L W
Subjt:  CVCSSRVEAEYIVAGSGYTQLMW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTAGTTTACTTTATTTAATGACCAGTAAACCTGACATTGCCTATGCTGTGGGAATGTGCGTTCGTTTTCAATCTAATTCCCGAGTTTCACTTCTTGTTGTTGT
TAAAAGAATCATCAAATATGTTCATGGCACAAGTGATTTTGGAGTTTTCTACTCATATGATACAAACTCTATTCTTGTTGGCTATTGTGATGTAGATTGGCCAAGTTGTT
CAGAGGATAGGAAAAGCACTCTAGGAGGATGTTTCTTTCTTGGTAACAATCTAATTTCCTGGTTTAGTAAAAAACAAAATTGTGTTTGCTCGTCTAGAGTAGAGGCAGAG
TATATTGTAGCTGGGAGTGGGTACACTCAGCTCATGTGGATGAAACAGATGCTTAATGAATATGGTATTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTAGTTTACTTTATTTAATGACCAGTAAACCTGACATTGCCTATGCTGTGGGAATGTGCGTTCGTTTTCAATCTAATTCCCGAGTTTCACTTCTTGTTGTTGT
TAAAAGAATCATCAAATATGTTCATGGCACAAGTGATTTTGGAGTTTTCTACTCATATGATACAAACTCTATTCTTGTTGGCTATTGTGATGTAGATTGGCCAAGTTGTT
CAGAGGATAGGAAAAGCACTCTAGGAGGATGTTTCTTTCTTGGTAACAATCTAATTTCCTGGTTTAGTAAAAAACAAAATTGTGTTTGCTCGTCTAGAGTAGAGGCAGAG
TATATTGTAGCTGGGAGTGGGTACACTCAGCTCATGTGGATGAAACAGATGCTTAATGAATATGGTATTCAATAG
Protein sequenceShow/hide protein sequence
MIGSLLYLMTSKPDIAYAVGMCVRFQSNSRVSLLVVVKRIIKYVHGTSDFGVFYSYDTNSILVGYCDVDWPSCSEDRKSTLGGCFFLGNNLISWFSKKQNCVCSSRVEAE
YIVAGSGYTQLMWMKQMLNEYGIQ