CuGenDBv2

Gene ID	Cmc04g0093511
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:5810776..5811150
RNA-Seq Expression	Cmc04g0093511
Synteny	Cmc04g0093511
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

3.4e-64

99.18

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

KAA0041424.1 pol protein [Cucumis melo var. makuwa]

3.4e-64

99.18

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.4e-64

99.18

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

3.4e-64

99.18

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

3.4e-64

99.18

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJH3 Reverse transcriptase

1.6e-64

99.18

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

A0A5A7U7V9 Reverse transcriptase

1.6e-64

99.18

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

1.6e-64

99.18

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

A0A5A7VDP3 Pol protein

1.6e-64

99.18

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

A0A5A7VJE2 Reverse transcriptase

1.6e-64

99.18

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDS
        LNQVLEDMLRACALEFPGSWDS
Subjt:  LNQVLEDMLRACALEFPGSWDS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.5e-19

39.17

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K    VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSW
         NQ +E +LR      P +W
Subjt:  LNQVLEDMLRACALEFPGSW

P0CT35 Transposon Tf2-2 polyprotein

1.5e-19

39.17

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K    VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSW
         NQ +E +LR      P +W
Subjt:  LNQVLEDMLRACALEFPGSW

P0CT41 Transposon Tf2-12 polyprotein

1.5e-19

39.17

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K    VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSW
         NQ +E +LR      P +W
Subjt:  LNQVLEDMLRACALEFPGSW

Q99315 Transposon Ty3-G Gag-Pol polyprotein

4.0e-20

42.5

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Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDF+TGLP T     +I VVVDR +K  HF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSW
          Q L  +LRA A     +W
Subjt:  LNQVLEDMLRACALEFPGSW

Q9UR07 Transposon Tf2-11 polyprotein

1.5e-19

39.17

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K    VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSW
         NQ +E +LR      P +W
Subjt:  LNQVLEDMLRACALEFPGSW

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGATTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAACGCACTTCGTTCCGGGTAAGTCCACCTA
TACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTGCACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGA
AGGGCTTGCAGACTGCTATGGGCACGAGGTTAGATTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGA
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCTACATTGA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSLH

Cmc04g0093511 (gene) of Melon (Charmono) v1.1 genome