CuGenDBv2

Gene ID	Cmc04g0093521
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:5811677..5812867
RNA-Seq Expression	Cmc04g0093521
Synteny	Cmc04g0093521
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-215

96.63

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

KAA0040689.1 pol protein [Cucumis melo var. makuwa]

1.8e-215

96.63

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPS+SPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

KAA0043391.1 pol protein [Cucumis melo var. makuwa]

3.0e-215

96.13

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Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYY RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCDTV
        GCVLMQQGKVVAYASRQLKSH+QNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+T+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCDTV

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.6e-216

97.15

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

TYK01613.1 pol protein [Cucumis melo var. makuwa]

7.9e-216

96.89

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T190 Reverse transcriptase

1.1e-215

96.63

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKF KCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

A0A5A7THE6 Reverse transcriptase

8.5e-216

96.63

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPS+SPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVL VP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

A0A5A7TP96 Reverse transcriptase

1.4e-215

96.13

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYY RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCDTV
        GCVLMQQGKVVAYASRQLKSH+QNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+T+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCDTV

A0A5A7U330 Reverse transcriptase

7.7e-217

97.15

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

A0A5D3BPI1 Reverse transcriptase

3.8e-216

96.89

Show/hide

Query:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELK+QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
        VSVDP KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVP+GSGSFVIYSDASKKGL
Subjt:  VSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        GCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL    F  +IWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDC+
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.2e-78

38.6

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Query:  KELKIQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT
        +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +  E V KT
Subjt:  KELKIQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT

Query:  AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV
        AF +++GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+
Subjt:  AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV

Query:  SVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL
          +P KIEA+  +  P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L VP+ +  F + +DAS   L
Subjt:  SVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGL

Query:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
        G VL Q G  ++Y SR L  HE NY T + EL    +  + +RHYL G   +I +DH+ L + +  K+ N +  RW   + ++D D
Subjt:  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.8e-77

37.43

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Query:  ELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA
        E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +E + KTA
Subjt:  ELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA

Query:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS
        F ++ GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+ 
Subjt:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS

Query:  VDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLG
         +P K++A+  +  P+   E+R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L +P+    FV+ +DAS   LG
Subjt:  VDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLG

Query:  CVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDY
         VL Q G  +++ SR L  HE NY   + EL    +  + +RHYL G +  I +DH+ L++    KE   +  RW   + +Y
Subjt:  CVLMQQGKVVAYASRQLKSHEQNYPTHDLELQQ-CFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.2e-71

38.54

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Query:  KELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT
         G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT

Query:  KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLGCVLMQ
        K  A+  +  P TV + + FLG+  YYRRF+ N S+IA P+       +   W++  + + + LK  L  +PVL       ++ + +DASK G+G VL +
Subjt:  KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLGCVLMQ

Query:  QGK------VVAYASRQLKSHEQNYPTHDLELQQCF-CFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD
                 VV Y S+ L+S ++NYP  +LEL         +R+ L+G+   + TDH SL     + E   R +RWL+ +  YD
Subjt:  QGK------VVAYASRQLKSHEQNYPTHDLELQQCF-CFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

6.5e-72

35.07

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Query:  ELKIQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA
        E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKTA
Subjt:  ELKIQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA

Query:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS
        F +  G YEF+ + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    L     K  F   QV FLG++V+  G+ 
Subjt:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS

Query:  VDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVI
         DP K+ A++    P++V E++ FLG+  YYR+F+++++++A PLT LTR              P    +    SF +LK  L ++ +L  P  +  F +
Subjt:  VDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVI

Query:  YSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTHDLE-LQQCFCFEIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD
         +DAS   +G VL Q    + + +AY SR L   E+NY T + E L   +  +  R YLYG   I+++TDH+ L +    +  N + +RW   +++Y+C+
Subjt:  YSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTHDLE-LQQCFCFEIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCD

Query:  TV
         +
Subjt:  TV

Q99315 Transposon Ty3-G Gag-Pol polyprotein

5.5e-71

38.54

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Query:  KELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT
         G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT

Query:  KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLGCVLMQ
        K  A+  +  P TV + + FLG+  YYRRF+ N S+IA P+       +   W++  + +   LK  L  +PVL       ++ + +DASK G+G VL +
Subjt:  KIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLGCVLMQ

Query:  QGK------VVAYASRQLKSHEQNYPTHDLELQQCF-CFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD
                 VV Y S+ L+S ++NYP  +LEL         +R+ L+G+   + TDH SL     + E   R +RWL+ +  YD
Subjt:  QGK------VVAYASRQLKSHEQNYPTHDLELQQCF-CFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYD

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

8.6e-27

44.27

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Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DP K+EA+ GW  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVLTVPEGSGSFV
        ++    +F+ LK  + T PVL +P+    FV
Subjt:  SKACEDSFQNLKQKLVTAPVLTVPEGSGSFV

Sequences

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CDS sequence

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ATGGCCCCCGCAGAACTGAAGGAACTGAAGATACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTCGTTAA
GAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATCGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGT
TTTGGCTGAAGCAGGTGTCCTTTCTGGGTCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAACTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGCTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTT
TGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTGGTTACCGCACCGGTTCTTACTGTACCTGAAGGTTCTGGCAGTTTTGTGATTTATAGTG
ATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATCTA
GAGTTGCAGCAGTGTTTTTGCTTTGAAATATGGAGGCATTATTTATATGGTGAAAAGATACAGATATTCACAGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGA
ATTGAATATGAGACAGCGAAGGTGGCTTGAGTTAGTGAAGGATTACGATTGTGATACTGTATCATCCGGGCAAGGCAAATGTGGTAGCTGA

mRNA sequence

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Protein sequence

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MAPAELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHY
EFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTGWTRPSTV
SEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPEGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDL
ELQQCFCFEIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCDTVSSGQGKCGS

Cmc04g0093521 (gene) of Melon (Charmono) v1.1 genome