; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0093731 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0093731
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:6080570..6081528
RNA-Seq ExpressionCmc04g0093731
SyntenyCmc04g0093731
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-15087.15Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGA LF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

KAA0036676.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

TrEMBL top hitse value%identityAlignment
A0A5A7T3K4 Reverse transcriptase1.5e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

A0A5A7U2V7 Reverse transcriptase5.6e-15187.15Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGA LF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

A0A5A7U819 Reverse transcriptase1.5e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

A0A5A7V4W9 Reverse transcriptase1.5e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

A0A5A7VNK4 Reverse transcriptase1.5e-15187.46Show/hide
Query:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK
        MA SELKELKMQLQELVDKGYI+PSVS WGAPVLFVKKKDGTLRLCIDYRQLNK+T RNKYPLP IDDLFDQLRGATLF KIDLRSG HQLKVRES+I K
Subjt:  MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITK

Query:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE
         AFRTRYGHYEFRVM FGLTNAPAV MDLM RIFH+YLDQFVI+FIDDILVY VDRESHEEHLRIVLQTLR+KQLYAKFSK               SAK 
Subjt:  IAFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKE

Query:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
        VSVD QKVEAVVNWERPISATEVRSFLGLAGYYRRFI+DFSRLAL LTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALP+TGKDYVIYCDAS+LGL
Subjt:  VSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQLK
        GCVLMQDGNVIAYASRQLK
Subjt:  GCVLMQDGNVIAYASRQLK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.3e-4833.02Show/hide
Query:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGT-----LRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKI
        +E++ Q+Q+++++G I+ S S + +P+  V KK         R+ IDYR+LN+IT  +++P+P++D++  +L     F  IDL  G HQ+++   +++K 
Subjt:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGT-----LRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKI

Query:  AFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--FSAKE------------V
        AF T++GHYE+  M FGL NAPA     M  I    L++  ++++DDI+V+    + H + L +V + L    L  +  K  F  +E            +
Subjt:  AFRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--FSAKE------------V

Query:  SVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSD-KCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
          + +K+EA+  +  P    E+++FLGL GYYR+FI +F+ +A  +T   +KN K + ++ + + +F++LK  +   PIL +P   K + +  DAS + L
Subjt:  SVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSD-KCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQL
        G VL QDG+ ++Y SR L
Subjt:  GCVLMQDGNVIAYASRQL

P20825 Retrovirus-related Pol polyprotein from transposon 2971.2e-4935.53Show/hide
Query:  ELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKD-----GTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIA
        E++ Q+QE++++G I+ S S + +P   V KK         R+ IDYR+LN+IT  ++YP+P++D++  +L     F  IDL  G HQ+++ E +I+K A
Subjt:  ELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKD-----GTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIA

Query:  FRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--FSAKE------------VS
        F T+ GHYE+  M FGL NAPA     M  I    L++  ++++DDI+++      H   +++V   L D  L  +  K  F  KE            + 
Subjt:  FRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--FSAKE------------VS

Query:  VDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCE--QSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL
         +  KV+A+V++  P    E+R+FLGL GYYR+FI +++ +A  +T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+  DAS L L
Subjt:  VDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCE--QSFQELKKRLVTAPILALPITGKDYVIYCDASKLGL

Query:  GCVLMQDGNVIAYASRQL
        G VL Q+G+ I++ SR L
Subjt:  GCVLMQDGNVIAYASRQL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.3e-4735.94Show/hide
Query:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIAFRTR
        +E+   +Q+L+D  +I PS S   +PV+ V KKDGT RLC+DYR LNK T  + +PLP ID+L  ++  A +F  +DL SG HQ+ +   +  K AF T 
Subjt:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIAFRTR

Query:  YGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFS--KFSAKEV-----SVDLQKV-----
         G YE+ VM FGL NAP+     M   F     +FV +++DDIL++    E H +HL  VL+ L+++ L  K    KF+++E      S+ +QK+     
Subjt:  YGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFS--KFSAKEV-----SVDLQKV-----

Query:  --EAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGK-DYVIYCDASKLGLGCVLM
           A+ ++  P +  + + FLG+  YYRRFI + S++A  +        K +W++K +++ ++LK  L  +P+L +P   K +Y +  DASK G+G VL 
Subjt:  --EAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGK-DYVIYCDASKLGLGCVLM

Query:  QDGN------VIAYASRQLK
        +  N      V+ Y S+ L+
Subjt:  QDGN------VIAYASRQLK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-4635.05Show/hide
Query:  ELKMQLQELVDKGYIKPSVSSWGAPVLFVKKK-----DGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIA
        E++ Q+ EL+  G I+PS S + +P+  V KK     +   R+ +D+++LN +T  + YP+P I+     L  A  F  +DL SG HQ+ ++ES+I K A
Subjt:  ELKMQLQELVDKGYIKPSVSSWGAPVLFVKKK-----DGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIA

Query:  FRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKEVS
        F T  G YEF  + FGL NAPA+   ++  I  +++ +   ++IDDI+V+  D ++H ++LR+VL +L    L     K               +A  + 
Subjt:  FRTRYGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSK--------------FSAKEVS

Query:  VDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTAPILALPITGKDYVI
         D +KV A+     P S  E++ FLG+  YYR+FI+D++++A  LT LTR    N K   S K          QSF +LK  L ++ ILA P   K + +
Subjt:  VDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTAPILALPITGKDYVI

Query:  YCDASKLGLGCVLMQD----GNVIAYASRQL
          DAS   +G VL QD       IAY SR L
Subjt:  YCDASKLGLGCVLMQD----GNVIAYASRQL

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.3e-4735.94Show/hide
Query:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIAFRTR
        +E+   +Q+L+D  +I PS S   +PV+ V KKDGT RLC+DYR LNK T  + +PLP ID+L  ++  A +F  +DL SG HQ+ +   +  K AF T 
Subjt:  KELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIAFRTR

Query:  YGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFS--KFSAKEV-----SVDLQKV-----
         G YE+ VM FGL NAP+     M   F     +FV +++DDIL++    E H +HL  VL+ L+++ L  K    KF+++E      S+ +QK+     
Subjt:  YGHYEFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFS--KFSAKEV-----SVDLQKV-----

Query:  --EAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGK-DYVIYCDASKLGLGCVLM
           A+ ++  P +  + + FLG+  YYRRFI + S++A  +        K +W++K +++  +LK  L  +P+L +P   K +Y +  DASK G+G VL 
Subjt:  --EAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGK-DYVIYCDASKLGLGCVLM

Query:  QDGN------VIAYASRQLK
        +  N      V+ Y S+ L+
Subjt:  QDGN------VIAYASRQLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.7e-1738.71Show/hide
Query:  HLRIVLQTLRDKQLYAKFSK----------------FSAKEVSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEW
        HL +VLQ     Q YA   K                 S + VS D  K+EA+V W  P + TE+R FLGL GYYRRF+K++ ++   LT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFSK----------------FSAKEVSVDLQKVEAVVNWERPISATEVRSFLGLAGYYRRFIKDFSRLALCLTALTRKNAKFEW

Query:  SDKCEQSFQELKKRLVTAPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQELKKRLVTAPILALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTAAGCGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAAGCCTAGTGTTTCGTCGTGGGGAGCACCAGTGCTATTTGTGAA
AAAGAAAGATGGTACCCTTAGATTATGTATTGACTATAGACAGTTAAACAAGATTACAACACGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAACTAA
GGGGAGCAACGTTGTTCTATAAGATTGACTTAAGGTCAGGATGCCACCAGTTGAAGGTTAGAGAATCAAATATTACTAAGATAGCATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGTCATTCGGTTTAACGAATGCGCCAGCGGTTCTCATGGATCTCATGAAAAGGATCTTCCATCAGTATTTAGATCAATTTGTGATTATGTTCATTGA
TGATATATTAGTTTACTTGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATTTTCAG
CAAAAGAAGTTAGTGTCGATCTACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTTCTGGGTTTGGCAGGATACTATAGG
CGTTTTATTAAGGATTTCTCTCGATTGGCATTGTGTTTGACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAA
GAAAAGACTAGTCACAGCACCTATTTTGGCACTTCCTATAACAGGGAAGGACTATGTGATTTATTGTGACGCTTCAAAGCTAGGATTAGGTTGTGTGCTTATGCAAGATG
GGAATGTAATAGCTTATGCTTCAAGGCAATTGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTAAGCGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAAGCCTAGTGTTTCGTCGTGGGGAGCACCAGTGCTATTTGTGAA
AAAGAAAGATGGTACCCTTAGATTATGTATTGACTATAGACAGTTAAACAAGATTACAACACGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAACTAA
GGGGAGCAACGTTGTTCTATAAGATTGACTTAAGGTCAGGATGCCACCAGTTGAAGGTTAGAGAATCAAATATTACTAAGATAGCATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGTCATTCGGTTTAACGAATGCGCCAGCGGTTCTCATGGATCTCATGAAAAGGATCTTCCATCAGTATTTAGATCAATTTGTGATTATGTTCATTGA
TGATATATTAGTTTACTTGGTTGACAGAGAATCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATTTTCAG
CAAAAGAAGTTAGTGTCGATCTACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTTCTGGGTTTGGCAGGATACTATAGG
CGTTTTATTAAGGATTTCTCTCGATTGGCATTGTGTTTGACCGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAA
GAAAAGACTAGTCACAGCACCTATTTTGGCACTTCCTATAACAGGGAAGGACTATGTGATTTATTGTGACGCTTCAAAGCTAGGATTAGGTTGTGTGCTTATGCAAGATG
GGAATGTAATAGCTTATGCTTCAAGGCAATTGAAGTAG
Protein sequenceShow/hide protein sequence
MALSELKELKMQLQELVDKGYIKPSVSSWGAPVLFVKKKDGTLRLCIDYRQLNKITTRNKYPLPHIDDLFDQLRGATLFYKIDLRSGCHQLKVRESNITKIAFRTRYGHY
EFRVMSFGLTNAPAVLMDLMKRIFHQYLDQFVIMFIDDILVYLVDRESHEEHLRIVLQTLRDKQLYAKFSKFSAKEVSVDLQKVEAVVNWERPISATEVRSFLGLAGYYR
RFIKDFSRLALCLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPITGKDYVIYCDASKLGLGCVLMQDGNVIAYASRQLK