CuGenDBv2

Gene ID	Cmc04g0093751
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:6095552..6096190
RNA-Seq Expression	Cmc04g0093751
Synteny	Cmc04g0093751
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037939.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

5.0e-76

73.87

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLHPFL+KFV++YFDDILVFS  L+EH+ H+ Q+FE LAKNELYINLKKC F  +EI FLGFII KNHILMDEKKVKAI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYF
        PI  S+KEVQAF+ LASFYRKFI+N + IA PITDCLKK  FLW+ +QQD+FE LK+ LS+  VLKL DF+QPF VAV+A  T IG +LSQSG PIEYF
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYF

KAA0051933.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.3e-81

72.9

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLHPFLNKFV++YFDDIL FS  L+EH+ H+ Q+FE LAKNELYINLKKC F  +EI FLGFII KNHILMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
        PIP S+KEVQAF+ LASFYRKFI+N   IA PI DCLKK  FLW  K+QD+FE LK+KLS+  +L+L DF+QPFEVAV+A  T IG+ LSQ+G PIE+FS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKL  SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]

1.2e-72

67.76

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPF LSNAPSTFMRL+N+VLHPFLNKF+++YFDDILVFS   ++H  HI Q+F+VL  NELY+NLKKC F   EI FLGFII K+H+LMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
          P ++ +VQAFL LASFYRKFI N S IA PITDCLKK  F W  KQQD+F  LK+ L + LVLKL DF Q FEVAV+   T IGA+LSQ   PIEYFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        E+LS+SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

KAA0057262.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.8e-73

67.29

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        M FGLSNAPSTFMRL+N+VLHPFLNKF+++YFDDILVFS   ++H  HI Q+F+VL  NELY+NLKKC F   EI FLGFII K+H+LMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
            ++K+VQAFL LASFYRKFI N S IA PITDCLKK  F W  KQQ +F  LK+ LS+  VLKLLDF+Q FEVAV+A  T IG ++SQ G  I YFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKLS+SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

TYK06567.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.2e-93

84.58

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLH FLNKFVV+YFDDILVFS CL+EHNTH+YQVFEVLAKNELYINLKKCTF  +EI FLGFII KNHILMDEKKV+AIRNW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
        PIPKSIKEVQAFL LASFYRKFIYN S IA  ITDCLKK GFLW KKQQD+FEALKKKLS+K VLKL  FTQPFEV V+A RT  GA+LSQSG PIEYFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKL+QSRQM STYE
Subjt:  EKLSQSRQMWSTYE

TrEMBL top hits

e value

%identity

Alignment

A0A5D3C402 DNA/RNA polymerases superfamily protein

5.7e-94

84.58

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLH FLNKFVV+YFDDILVFS CL+EHNTH+YQVFEVLAKNELYINLKKCTF  +EI FLGFII KNHILMDEKKV+AIRNW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
        PIPKSIKEVQAFL LASFYRKFIYN S IA  ITDCLKK GFLW KKQQD+FEALKKKLS+K VLKL  FTQPFEV V+A RT  GA+LSQSG PIEYFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKL+QSRQM STYE
Subjt:  EKLSQSRQMWSTYE

A0A5D3CPI6 Putative gag-pol polyprotein

1.1e-81

72.9

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLHPFLNKFV++YFDDIL FS  L+EH+ H+ Q+FE LAKNELYINLKKC F  +EI FLGFII KNHILMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
        PIP S+KEVQAF+ LASFYRKFI+N   IA PI DCLKK  FLW  K+QD+FE LK+KLS+  +L+L DF+QPFEVAV+A  T IG+ LSQ+G PIE+FS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKL  SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

A0A5D3D575 Putative gag-pol polyprotein

4.3e-73

67.29

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        M FGLSNAPSTFMRL+N+VLHPFLNKF+++YFDDILVFS   ++H  HI Q+F+VL  NELY+NLKKC F   EI FLGFII K+H+LMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
            ++K+VQAFL LASFYRKFI N S IA PITDCLKK  F W  KQQ +F  LK+ LS+  VLKLLDF+Q FEVAV+A  T IG ++SQ G  I YFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        EKLS+SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

A0A5D3D668 Retrovirus-related Pol polyprotein from transposon 17.6

2.4e-76

73.87

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGLSNAPSTFMRL+NQVLHPFL+KFV++YFDDILVFS  L+EH+ H+ Q+FE LAKNELYINLKKC F  +EI FLGFII KNHILMDEKKVKAI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYF
        PI  S+KEVQAF+ LASFYRKFI+N + IA PITDCLKK  FLW+ +QQD+FE LK+ LS+  VLKL DF+QPF VAV+A  T IG +LSQSG PIEYF
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYF

A0A5D3DGR0 Reverse transcriptase

5.6e-73

67.76

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPF LSNAPSTFMRL+N+VLHPFLNKF+++YFDDILVFS   ++H  HI Q+F+VL  NELY+NLKKC F   EI FLGFII K+H+LMDEKKV+AI+NW
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS
          P ++ +VQAFL LASFYRKFI N S IA PITDCLKK  F W  KQQD+F  LK+ L + LVLKL DF Q FEVAV+   T IGA+LSQ   PIEYFS
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFS

Query:  EKLSQSRQMWSTYE
        E+LS+SRQ WSTYE
Subjt:  EKLSQSRQMWSTYE

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.7e-42

43.98

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGL NAP+TF R +N +L P LNK  ++Y DDI+VFS  L+EH   +  VFE LAK  L + L KC F  QE  FLG ++T + I  + +K++AI+ +
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFL--WKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEY
        PIP   KE++AFL L  +YRKFI N + IA P+T CLKK   +     +    F+ LK  +S+  +LK+ DFT+ F +  +A   ++GA+LSQ G P+ Y
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFL--WKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEY

Query:  FSEKLSQSRQMWSTYE
         S  L++    +ST E
Subjt:  FSEKLSQSRQMWSTYE

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

4.2e-33

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        +PFGL NA S F R ++ VL   + K   +Y DD+++FS    +H  HI  V + L    + ++ +K  F  + +E+LGFI++K+    D +KVKAI+ +
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEG------------FLWKKKQQDNFEALKKKL-SDKLVLKLLDFTQPFEVAVNAFRTSIGA
        P P  + +V++FL LAS+YR FI + + IA PITD LK E               + + Q++ F+ L+  L S+ ++LK  DF +PF++  +A  + IGA
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEG------------FLWKKKQQDNFEALKKKL-SDKLVLKLLDFTQPFEVAVNAFRTSIGA

Query:  ILSQSGQPIEYFSEKLSQSRQMWSTYE
        +LSQ G+PI   S  L Q  Q ++T E
Subjt:  ILSQSGQPIEYFSEKLSQSRQMWSTYE

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.3e-39

43.52

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGL NAP+TF R +N +L P LNK  ++Y DDI++FS  L EH   I  VF  LA   L + L KC F  +E  FLG I+T + I  +  KVKAI ++
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQ--DNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEY
        PIP   KE++AFL L  +YRKFI N + IA P+T CLKK   +  +K +  + FE LK  +    +L+L DF + F +  +A   ++GA+LSQ+G PI +
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQ--DNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEY

Query:  FSEKLSQSRQMWSTYE
         S  L+     +S  E
Subjt:  FSEKLSQSRQMWSTYE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.7e-26

36.94

Show/hide

Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        MPFGL NAPSTF R +         +FV +Y DDIL+FS   EEH  H+  V E L    L +  KKC F  +E EFLG+ I    I   + K  AIR++
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPIT--DCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQP---
        P PK++K+ Q FL + ++YR+FI N S IA PI    C K +   W +KQ    E LK  L +  VL   +    + +  +A +  IGA+L +       
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPIT--DCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQP---

Query:  ---IEYFSEKLSQSRQMWSTYE
           + YFS+ L  +++ +   E
Subjt:  ---IEYFSEKLSQSRQMWSTYE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

3.0e-31

35.65

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Query:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW
        +PFGL NAP+ F R+I+ +L   + K   +Y DDI+VFS   + H  ++  V   L+K  L +NL+K  F   ++EFLG+I+T + I  D KKV+AI   
Subjt:  MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTF--QEIEFLGFIITKNHILMDEKKVKAIRNW

Query:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLK------------KEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAI
        P P S+KE++ FL + S+YRKFI + + +A P+T+  +            K      +    +F  LK  L    +L    FT+PF +  +A   +IGA+
Subjt:  PIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLK------------KEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAI

Query:  LSQSGQ----PIEYFSEKLSQSRQMWSTYE
        LSQ  Q    PI Y S  L+++ + ++T E
Subjt:  LSQSGQ----PIEYFSEKLSQSRQMWSTYE

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.2e-16

33.81

Show/hide

Query:  HIYQVFEVLAKNELYINLKKCTF--QEIEFLG--FIITKNHILMDEKKVKAIRNWPIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWK
        H+  V ++  +++ Y N KKC F   +I +LG   II+   +  D  K++A+  WP PK+  E++ FL L  +YR+F+ N   I  P+T+ LKK    W 
Subjt:  HIYQVFEVLAKNELYINLKKCTF--QEIEFLG--FIITKNHILMDEKKVKAIRNWPIPKSIKEVQAFLDLASFYRKFIYNLSIIATPITDCLKKEGFLWK

Query:  KKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTS
        +     F+ALK  ++   VL L D   PF   V  +  S
Subjt:  KKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCATTTGGGCTCTCCAACGCTCCTAGCACTTTCATGAGACTTATAAACCAAGTACTTCATCCTTTCCTTAATAAATTTGTCGTTATTTATTTTGATGATATCTTGGT
TTTTAGCATATGCCTAGAAGAGCATAATACACATATATACCAAGTGTTCGAAGTACTGGCAAAAAATGAACTATACATCAACCTCAAGAAATGCACCTTTCAAGAAATAG
AATTTTTGGGATTTATTATCACGAAGAATCACATTTTAATGGATGAAAAGAAAGTTAAGGCAATTAGAAACTGGCCAATACCAAAATCAATAAAAGAAGTACAAGCATTC
CTAGACTTGGCATCATTCTACAGGAAGTTCATTTATAACTTGAGTATTATTGCCACCCCAATTACAGACTGCCTAAAGAAGGAAGGCTTCTTATGGAAAAAGAAACAACA
AGACAACTTTGAAGCTTTGAAGAAAAAGTTGAGTGACAAACTAGTCCTAAAACTCCTCGACTTTACACAGCCATTTGAAGTAGCTGTTAATGCCTTCAGGACCAGTATTG
GAGCTATTTTATCTCAATCAGGCCAGCCTATTGAGTACTTCAGTGAAAAACTCAGCCAATCAAGGCAAATGTGGAGCACTTATGAATAA

mRNA sequence

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Protein sequence

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MPFGLSNAPSTFMRLINQVLHPFLNKFVVIYFDDILVFSICLEEHNTHIYQVFEVLAKNELYINLKKCTFQEIEFLGFIITKNHILMDEKKVKAIRNWPIPKSIKEVQAF
LDLASFYRKFIYNLSIIATPITDCLKKEGFLWKKKQQDNFEALKKKLSDKLVLKLLDFTQPFEVAVNAFRTSIGAILSQSGQPIEYFSEKLSQSRQMWSTYE

Cmc04g0093751 (gene) of Melon (Charmono) v1.1 genome