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Cmc04g0094261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0094261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:6785064..6785516
RNA-Seq ExpressionCmc04g0094261
SyntenyCmc04g0094261
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032699.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-7796.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGN AFTWSSKK PIVTLSTCEAEYVVVASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLKKVGILQDGPTVIHVD+N+TIALAKNPVFHDRSKHIVTRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

KAA0056915.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]8.2e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

TYK03241.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.3e-7391.33Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIHVDN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.2e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.2e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

A0A5D3BJ51 Putative mitochondrial protein5.3e-7896.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGN AFTWSSKK PIVTLSTCEAEYVVVASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLKKVGILQDGPTVIHVD+N+TIALAKNPVFHDRSKHIVTRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

A0A5D3BU42 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-7391.33Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIHVDN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-7390.67Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        MES TTTHLKVAKRILRYL+GTLDYGLFYSSSKEFKLEGYCDSDWA DTNDRKSTSGYV FIGNTAFTWSSKK PIVTLSTCEAEYV  ASCVCHAVWLR
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
        NLLK VGILQ+ PTVIH+DN +TIALAKNPVFHDRSKHI TRFHFIRDCI
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.1e-2341.73Show/hide
Query:  KRILRYLKGTLDYGLFYSSSKEF--KLEGYCDSDWARDTNDRKSTSGYVL-FIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLRNLLKKVGIL
        KR+LRYLKGT+D  L +  +  F  K+ GY DSDWA    DRKST+GY+          W++K+   V  S+ EAEY+ +   V  A+WL+ LL  + I 
Subjt:  KRILRYLKGTLDYGLFYSSSKEF--KLEGYCDSDWARDTNDRKSTSGYVL-FIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLRNLLKKVGIL

Query:  QDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD
         + P  I+ DN   I++A NP  H R+KHI  ++HF R+
Subjt:  QDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD

P0CV72 Secreted RxLR effector protein 1612.1e-1544.09Show/hide
Query:  THLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWL
        TH +  KR+LRYL+ T  YGL ++ +   KL GY D+DWA D   R+STSGY+  +     +W SKK   V LS+ E EY+ ++     AVWL
Subjt:  THLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.2e-2237.33Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        +E+    H +  K ILRYL+GT    L +  S    L+GY D+D A D ++RKS++GY+      A +W SK    V LST EAEY+         +WL+
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI
          L+++G+ Q    V++ D+ + I L+KN ++H R+KHI  R+H+IR+ +
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-2843.92Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        M   T  HL+  KRILRYL GT ++G+F        L  Y D+DWA D +D  ST+GY++++G+   +WSSKK   V  S+ EAEY  VA+      W+ 
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD
        +LL ++GI    P VI+ DN     L  NPVFH R KHI   +HFIR+
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.4e-2943.92Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR
        M   T  H    KR+LRYL GT D+G+F        L  Y D+DWA DT+D  ST+GY++++G+   +WSSKK   V  S+ EAEY  VA+      W+ 
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLR

Query:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD
        +LL ++GI    P VI+ DN     L  NPVFH R KHI   +HFIR+
Subjt:  NLLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.0e-2535.37Show/hide
Query:  ESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLRN
        E+    H +   +IL Y+KGT+  GLFYSS  E +L+ + D+ +    + R+ST+GY +F+G +  +W SKK  +V+ S+ EAEY  ++      +WL  
Subjt:  ESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLRN

Query:  LLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD
          +++ +    PT++  DN   I +A N VFH+R+KHI +  H +R+
Subjt:  LLKKVGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRD

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.7e-0737.5Show/hide
Query:  SSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGY
        +S T  ++   ++L Y+KGT+  GLFYS++ + +L+ + DSDWA   + R+S +G+
Subjt:  SSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein4.4e-1636.73Show/hide
Query:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVW
        M   T     + KR+LRY+KGT+ +GL+   + +  ++ +CDSDWA  T+ R+ST+G+  F+G    +WS+K+ P V+ S+ E EY  +A       W
Subjt:  MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTTCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGCACGCTTGACTACGGGTTGTTTTATTCCTCATCTAAAGAATTC
AAACTTGAAGGCTATTGTGATAGTGACTGGGCTAGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTATTCATTGGTAATACTGCATTTACTTGGAGT
TCTAAGAAGCTACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGTTGTGGCTTCATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGAAA
GTTGGAATTTTGCAAGATGGTCCAACTGTGATCCATGTAGACAATAATACAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGTT
ACAAGATTTCACTTCATCAGAGATTGCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTTCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGCACGCTTGACTACGGGTTGTTTTATTCCTCATCTAAAGAATTC
AAACTTGAAGGCTATTGTGATAGTGACTGGGCTAGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTATTCATTGGTAATACTGCATTTACTTGGAGT
TCTAAGAAGCTACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGTTGTGGCTTCATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGAAA
GTTGGAATTTTGCAAGATGGTCCAACTGTGATCCATGTAGACAATAATACAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGTT
ACAAGATTTCACTTCATCAGAGATTGCATTTGA
Protein sequenceShow/hide protein sequence
MESSTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKLEGYCDSDWARDTNDRKSTSGYVLFIGNTAFTWSSKKLPIVTLSTCEAEYVVVASCVCHAVWLRNLLKK
VGILQDGPTVIHVDNNTTIALAKNPVFHDRSKHIVTRFHFIRDCI