CuGenDBv2

Gene ID	Cmc04g0094441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:7183619..7184956
RNA-Seq Expression	Cmc04g0094441
Synteny	Cmc04g0094441
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004185 - serine-type carboxypeptidase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219 IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025843.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

KAA0064094.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

TYJ95793.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

TYK00004.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

TYK21117.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VA39 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-246

98.42

Show/hide

Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-246

98.42

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Query:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
        MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTM QIKAQK+KKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN
Subjt:  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWN

Query:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA
        YLKSEYEGDERIKGMRVLNLIREFELQKMKETE IKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLA+ILNALQA
Subjt:  YLKSEYEGDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQA

Query:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
        QEQRRAMRQEGAVEGALPAKHHENVRN KKKKFFKKNQISTRESSTYNKAGVKKG YPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ
Subjt:  QEQRRAMRQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQ

Query:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
        QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN
Subjt:  QGVEAKIAYQEEEEEDQLFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQN

Query:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL
        LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSF L
Subjt:  LLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFHL

SwissProt top hits

e value

%identity

Alignment

P25601 Putative transposon Ty5-1 protein YCL075W

2.8e-07

29.41

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Query:  NNNQQQGVEAKIAYQEEEEEDQ----------LFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGT
        N+   +   A +A  + E + Q          L + +  V    +  W+ D+GCT+HM HD+ +F     ++      G G  I + G GT+ I    GT
Subjt:  NNNQQQGVEAKIAYQEEEEEDQ----------LFVATCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGT

Query:  KHIQDVLFVPDINQNLLSV
          + DV +VPD+  NL+SV
Subjt:  KHIQDVLFVPDINQNLLSV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.7e-10

22.67

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Query:  NYQVWAVRMEAYMEALDIWEAVEEDYEIP-------ALPD-NPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERI
        NY +W+ ++ A  +  ++   ++    +P       A P  NP  T+ K Q DK        + +  A+S ++   +    +A +IW  L+  Y      
Subjt:  NYQVWAVRMEAYMEALDIWEAVEEDYEIP-------ALPD-NPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERI

Query:  KGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQAQEQR-RAMRQEG
           ++   ++++     K T+ I +Y   L+   +Q+ LLG        VE++L ++PE+++  I  +   KD T  TL +I   L   E +  A+    
Subjt:  KGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQAQEQR-RAMRQEG

Query:  AVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQE
         +     A  H N           +N      ++  N          P    +   HP     +    KC  C   GH A  C   +Q Q   + +  Q+
Subjt:  AVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQE

Query:  EEEEDQLFV--ATCFVGGE-SNESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQL
               +   A   +G   S+ +WL+DSG T+H+T D       +P T    V + +G  I +   G+ ++++     ++ ++L+VP+I++NL+SV +L
Subjt:  EEEEDQLFV--ATCFVGGE-SNESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQL

Query:  IE-KGFKVTFENEYCLIKD
            G  V F      +KD
Subjt:  IE-KGFKVTFENEYCLIKD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

7.5e-08

21.71

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Query:  NYQVWAVRMEAYMEALDIWEAVEEDYEIP-------ALPD-NPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERI
        NY +W+ ++ A  +  ++   ++    +P       A+P  NP  T+ + Q DK        + +  A+S ++   +    +A +IW  L+  Y  +   
Subjt:  NYQVWAVRMEAYMEALDIWEAVEEDYEIP-------ALPD-NPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERI

Query:  KGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEA---SISALENTKDLTQITLAKILNALQAQEQRRAMRQ
          +  L  I  F+                      Q+ LLG        VE++L ++P+ ++     I+A +    LT+I   +++N    + +  A+  
Subjt:  KGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEA---SISALENTKDLTQITLAKILNALQAQEQRRAMRQ

Query:  EGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPN---AKCTKCNQMGHEAVIC-------RNNNQ
           V        H N           +NQ +  ++  YN    +   + P S  ++  +      R+P     +C  C+  GH A  C          NQ
Subjt:  EGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPN---AKCTKCNQMGHEAVIC-------RNNNQ

Query:  QQGVEAKIAYQEEEEEDQLFVATCFVGGESN-ESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDI
        QQ       +Q          A   V    N  +WL+DSG T+H+T D       +P T    V I +G  I +   G+ ++ +   +  +  VL+VP+I
Subjt:  QQGVEAKIAYQEEEEEDQLFVATCFVGGESN-ESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDI

Query:  NQNLLSVGQL
        ++NL+SV +L
Subjt:  NQNLLSVGQL

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

1.3e-10

35.48

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Query:  VATCFVGGESNES-WLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGD-----YISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFK
        VA CF     +E+ WLI S  +NHMT   + F  L  +   KV+  +GD        V+G G +   + +G K I++VL+VP I  N LSV QL   GF+
Subjt:  VATCFVGGESNES-WLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGD-----YISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFK

Query:  VTFENEY-CLIKDAANQDIFKVKM
        V+ E    C + D     +F   M
Subjt:  VTFENEY-CLIKDAANQDIFKVKM

AT3G21000.1 Gag-Pol-related retrotransposon family protein

8.2e-10

19.71

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Query:  LIFDGDNYQVWAVRMEAYMEALDIWEAV-----EEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLK--SEYE
        ++ D  +Y++WA   ++ +    +W+ V     ++  + P L       ++   +D   K +KA   L ++++ ++F + ++  SA ++W+ L+  +E  
Subjt:  LIFDGDNYQVWAVRMEAYMEALDIWEAV-----EEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLK--SEYE

Query:  GDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQAQEQRRAM
           R++ + +  L ++ E  KM + E    Y  + L+I  ++        D  I + +  ++   F+   S LE   D+ ++T   ++     +    + 
Subjt:  GDERIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQAQEQRRAM

Query:  RQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKI
          E A+ G L        ++++ K   +K                                     W      C  C          +NN+ Q+  + +I
Subjt:  RQEGAVEGALPAKHHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKI

Query:  AYQEEEEEDQLFV-----ATCFVGGES--NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKH-IQDVLFVPDINQ
           +EE+ED++ V         +G ++  ++ W+I      +MT   + F  L  T    V   +G  + V+GKG + I   +G K  I++V+FVP +N+
Subjt:  AYQEEEEEDQLFV-----ATCFVGGES--NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKH-IQDVLFVPDINQ

Query:  NLLSVGQLIEKGFKVT
        N+LS G+++ K + ++
Subjt:  NLLSVGQLIEKGFKVT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGCCATAACAAGTTCTAGTTTCACTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTTATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGACACAAATCAAAGCGCAAAAGGATAAGAAGACAAAGAAATCCAAGGCAA
AGGCATGTCTGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAGCATATGAGATATGGAATTATCTCAAGTCAGAATATGAGGGAGATGAA
AGAATCAAAGGAATGCGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACAGAATTAATTAAAGAGTATTCTGTTAGGTTATTGGACATTGCAAA
CCAAATCAGATTACTTGGTTCTGTGTTCAAGGACTCAAGAATTGTAGAAAAAATTCTTGTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCCTTAGAAAATACCA
AAGATTTGACTCAAATCACTCTTGCAAAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAGCCATGAGGCAAGAAGGTGCTGTTGAAGGAGCCTTGCCAGCGAAG
CATCATGAGAACGTTAGGAACATTAAGAAGAAGAAGTTTTTCAAGAAGAATCAAATTTCTACTAGAGAATCTTCAACTTACAACAAAGCAGGAGTCAAGAAGGGATTCTA
TCCTCCCTGTTCACATTGCAATAAACAGGGTCATCCTCCTTTTAAATGCTGGAGGAGACCAAACGCCAAGTGCACCAAATGTAACCAAATGGGGCATGAAGCTGTAATTT
GCAGGAACAATAATCAACAACAAGGTGTAGAGGCCAAAATTGCTTATCAGGAGGAGGAGGAGGAGGATCAATTGTTTGTGGCAACATGCTTCGTGGGTGGTGAGTCAAAT
GAAAGCTGGCTAATTGACAGTGGATGTACCAACCATATGACTCATGACAAGGAGTTGTTTAAAGATCTGAAGCCAACAAATATCACCAAAGTCAGAATTGGCAATGGAGA
CTACATCTCAGTCAAAGGAAAGGGGACTATTGCGATTGCCAGTTGTAAAGGTACAAAACATATACAAGATGTTCTTTTTGTACCTGACATTAACCAAAATTTGTTGAGTG
TGGGTCAACTTATTGAAAAAGGTTTTAAAGTTACTTTTGAAAATGAATATTGCTTGATTAAGGATGCAGCAAATCAAGATATTTTCAAAGTAAAAATGAAAGGAAAAAGT
TTTCACTTAATCCTTTAG

mRNA sequence

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Protein sequence

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MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMTQIKAQKDKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDE
RIKGMRVLNLIREFELQKMKETELIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAKILNALQAQEQRRAMRQEGAVEGALPAK
HHENVRNIKKKKFFKKNQISTRESSTYNKAGVKKGFYPPCSHCNKQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCFVGGESN
ESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKS
FHLIL

Cmc04g0094441 (gene) of Melon (Charmono) v1.1 genome