; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0094581 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0094581
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr04:7508071..7508583
RNA-Seq ExpressionCmc04g0094581
SyntenyCmc04g0094581
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040689.1 pol protein [Cucumis melo var. makuwa]1.3e-9097.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELV+STNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

KAA0050751.1 pol protein [Cucumis melo var. makuwa]9.8e-9197.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

KAA0058465.1 pol protein [Cucumis melo var. makuwa]1.3e-9097.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR+KDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

KAA0062141.1 pol protein [Cucumis melo var. makuwa]1.3e-9097.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFE LYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

KAA0062245.1 pol protein [Cucumis melo var. makuwa]2.6e-9197.65Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGP+AYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

TrEMBL top hitse value%identityAlignment
A0A5A7THE6 Reverse transcriptase6.2e-9197.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELV+STNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

A0A5A7UB07 Pol protein4.8e-9197.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

A0A5A7UXX2 Pol protein6.2e-9197.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR+KDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

A0A5A7V8L8 Pol protein1.3e-9197.65Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGP+AYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

A0A5A7V8X5 Pol protein6.2e-9197.06Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
        MLRACALEFPGSWDSHLHLMEFAYNNSY+ATIGMAPFE LYGKCC+SPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE

Query:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP
        +GDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVP P
Subjt:  IGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.2e-1431.95Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E

Query:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        F+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein1.2e-1431.95Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E

Query:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        F+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein1.2e-1431.95Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E

Query:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        F+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein1.2e-1431.95Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E

Query:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        F+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein1.2e-1431.95Show/hide
Query:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E
        +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ E
Subjt:  MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYG-KCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-E

Query:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY
        F+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  FEIGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACCTACATTTGATGGAATTTGCTTATAATAACAGTTATCGGGCTACTATTGGCATGGCACCGTT
TGAGGCCCTGTACGGCAAATGTTGTAAATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGA
AGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAAGTAGCA
CCTATGAGAGGTGTTTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTT
GCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGCCGTATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACCTACATTTGATGGAATTTGCTTATAATAACAGTTATCGGGCTACTATTGGCATGGCACCGTT
TGAGGCCCTGTACGGCAAATGTTGTAAATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGA
AGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAAGTAGCA
CCTATGAGAGGTGTTTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTT
GCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGCCGTATCCATGA
Protein sequenceShow/hide protein sequence
MLRACALEFPGSWDSHLHLMEFAYNNSYRATIGMAPFEALYGKCCKSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVA
PMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPYP