CuGenDBv2

Gene ID	Cmc04g0094601
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag protease polyprotein
Genome location	CMiso1.1chr04:7532451..7532897
RNA-Seq Expression	Cmc04g0094601
Synteny	Cmc04g0094601
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037291.1 pol protein [Cucumis melo var. makuwa]

3.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

KAA0043391.1 pol protein [Cucumis melo var. makuwa]

3.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

KAA0046014.1 gag protease polyprotein [Cucumis melo var. makuwa]

3.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

KAA0063859.1 gag protease polyprotein [Cucumis melo var. makuwa]

3.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

TYK01613.1 pol protein [Cucumis melo var. makuwa]

3.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6R9 Reverse transcriptase

1.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

A0A5A7TP96 Reverse transcriptase

1.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

A0A5A7TSI1 Gag protease polyprotein

1.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

A0A5A7VEB0 Gag protease polyprotein

1.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

A0A5D3BPI1 Reverse transcriptase

1.9e-75

98.65

Show/hide

Query:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
        MLDFDVILGMDWLAANHASIDCSRKEVTFNPPS+ASFKFKGGGSKSLPQVISAIRASKLLSQG WGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG
Subjt:  MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPG

Query:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
        LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI
Subjt:  LPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCCAGCATAGATTGTTCACGTAAGGAGGTAACGTTTAACCCTCCCTCGGTGGCCAGTTT
TAAATTTAAGGGAGGAGGGTCAAAGTCGTTGCCCCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTATTTGGGGTATCTTAGCGAGTGTGGTGGATA
CTAGAGAGGCGGATGTATCCCTGTCATCAGAACCGGTAGTGAGGGACTATCCGGACGTTTTTCCTGAGGAACTTCCAGGGTTACCTCCGCACAGAGAGGTTGAGTTTGCC
ATAGAGTTGGAGCCGGGCACGGTTCCTATATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTGCAGGAATTGCTTGATAAGGGATT
CATTTGA

mRNA sequence

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Protein sequence

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MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSVASFKFKGGGSKSLPQVISAIRASKLLSQGIWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFA
IELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFI

Cmc04g0094601 (gene) of Melon (Charmono) v1.1 genome