CuGenDBv2

Gene ID	Cmc04g0094701
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	CMiso1.1chr04:7619588..7619815
RNA-Seq Expression	Cmc04g0094701
Synteny	Cmc04g0094701
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0000428 - DNA-directed RNA polymerase complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QJF46416.1 RNA polymerase alpha subunit [Cucumis melo]

7.5e-27

86.67

Show/hide

Query:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MILSKN TMVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

QWQ50130.1 RNA polymerase alpha subunit [Cyclanthera pedata]

1.9e-25

Show/hide

Query:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MILSKN TMVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQ D IGIAMRKALLGEI+GTCIT A S
Subjt:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

YP_004841815.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

3.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

YP_009004075.1 RNA polymerase alpha subunit [Cucumis hystrix]

3.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

YP_009346515.1 RNA polymerase alpha subunit [Cucumis x hytivus]

3.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1P4 DNA-directed RNA polymerase subunit alpha

1.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

A0A218KG62 DNA-directed RNA polymerase subunit alpha

1.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

A0A249RXS6 DNA-directed RNA polymerase subunit alpha

1.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

A0A249RZB5 DNA-directed RNA polymerase subunit alpha

1.9e-23

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

A0A6M3W2R9 DNA-directed RNA polymerase subunit alpha

3.7e-27

86.67

Show/hide

Query:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MILSKN TMVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

SwissProt top hits

e value

%identity

Alignment

A4GYU3 DNA-directed RNA polymerase subunit alpha

1.6e-24

80.6

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREK+++ST  L+WKCVESRA+SKRLYYGRFIL PLMKGQ D IGIAMR+ALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

A4QKD7 DNA-directed RNA polymerase subunit alpha

3.6e-24

80.6

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREK+K+ST  L+WKCVESR +SKRLYYGRFIL PLMKGQ D IGIAMR+ALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Q09ME5 DNA-directed RNA polymerase subunit alpha

2.8e-24

80.6

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREK+K+ST  L+WKCVESRA+SKRLYYGRFIL PLMKGQ D IGIAMR+ LLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Q14FC5 DNA-directed RNA polymerase subunit alpha

1.6e-24

80.6

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREK+++ST  L+WKCVESRA+SKRLYYGRFIL PLMKGQ D IGIAMR+ALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Q4VZK3 DNA-directed RNA polymerase subunit alpha

5.1e-26

86.57

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREKI++ST  LKWKCVESRA+SKRLYYGRFIL PLMKGQGD IGIAMRKALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

5.8e-25

79.1

Show/hide

Query:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS
        MVREK+K+ST  L+WKCVES+ +SKRLYYGRFIL PLMKGQ D IGIAMR+ALLGEI+GTCITRA S
Subjt:  MVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTTTATCCAAAAATTTTACTATGGTTCGAGAGAAAATCAAATTATCGACTTGGATACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGAGAGTAAGCGTCTTTATTA
TGGACGCTTTATTCTATTTCCACTTATGAAGGGACAAGGGGATATTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAAAGGGAACATGTATCACACGTGCAA
ATTCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MILSKNFTMVREKIKLSTWILKWKCVESRAESKRLYYGRFILFPLMKGQGDIIGIAMRKALLGEIKGTCITRANS

Cmc04g0094701 (gene) of Melon (Charmono) v1.1 genome