; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0094741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0094741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:7679959..7680780
RNA-Seq ExpressionCmc04g0094741
SyntenyCmc04g0094741
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046085.1 pol protein [Cucumis melo var. makuwa]1.8e-12388.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVFW-FSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVFW-FSGLLSTIVENFSRIATPLYSVDQKGSSF

KAA0048687.1 pol protein [Cucumis melo var. makuwa]1.8e-12388.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

KAA0062245.1 pol protein [Cucumis melo var. makuwa]2.4e-12388.33Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPST+S    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

KAA0066266.1 pol protein [Cucumis melo var. makuwa]4.1e-12388.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG  F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

TYK01613.1 pol protein [Cucumis melo var. makuwa]1.8e-12388.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

TrEMBL top hitse value%identityAlignment
A0A5A7TXE4 Reverse transcriptase9.0e-12488.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVFW-FSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVFW-FSGLLSTIVENFSRIATPLYSVDQKGSSF

A0A5A7U330 Reverse transcriptase9.0e-12488.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

A0A5A7V8L8 Pol protein1.2e-12388.33Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPST+S    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

A0A5A7VIT9 Reverse transcriptase2.0e-12388.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG  F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

A0A5D3BPI1 Reverse transcriptase9.0e-12488.72Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAP  +  ++DGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF
        VSVDP KIEAVTGWTRPSTVS    F   +G     VENFSRIATPL  + +KG+ F
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGSSF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.0e-4436.29Show/hide
Query:  KELKVQLQELLDKGFIRPSVSP-----WGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT
        +E++ Q+Q++L++G IR S SP     W  P+          R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +  E V KT
Subjt:  KELKVQLQELLDKGFIRPSVSP-----WGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT

Query:  AFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV
        AF +++GHYE++ M FGL NA A F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+
Subjt:  AFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV

Query:  SVDPTKIEAVTGW---TRPSTVSRFAVFWFSGLLSTIVENFSRIATPL
          +P KIEA+  +   T+P  +  F     +G     + NF+ IA P+
Subjt:  SVDPTKIEAVTGW---TRPSTVSRFAVFWFSGLLSTIVENFSRIATPL

P0CT41 Transposon Tf2-12 polyprotein7.0e-4133.6Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        + P +++ +  ++ + L  G IR S +    P  +  +++G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
         AFR   G +E++VM +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPTKIEAVTGWTRPSTVSRFAVFWFS-GLLSTIVENFSRIATPLYSVDQK
         +     I+ V  W +P        F  S   L   +   S++  PL ++ +K
Subjt:  VSVDPTKIEAVTGWTRPSTVSRFAVFWFS-GLLSTIVENFSRIATPLYSVDQK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-4535.86Show/hide
Query:  ELKVQLQELLDKGFIRPSVSP-----WGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA
        E++ Q+QE+L++G IR S SP     W  P+          R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +E + KTA
Subjt:  ELKVQLQELLDKGFIRPSVSP-----WGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA

Query:  FRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS
        F ++ GHYE++ M FGL NA A F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+ 
Subjt:  FRSRYGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS

Query:  VDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQK
         +P K++A+  +  P+       F   +G     + N++ IA P+ S  +K
Subjt:  VDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.3e-4239.09Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +P     ++DG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT
         G YE+ VM FGL NA + F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT

Query:  KIEAVTGWTRPSTVSRFAVFWFSGLLS---TIVENFSRIATPL
        K  A+  +  P TV +     F G+++     + N S+IA P+
Subjt:  KIEAVTGWTRPSTVSRFAVFWFSGLLS---TIVENFSRIATPL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.3e-4239.09Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +P     ++DG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT
         G YE+ VM FGL NA + F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPT

Query:  KIEAVTGWTRPSTVSRFAVFWFSGLLS---TIVENFSRIATPL
        K  A+  +  P TV +     F G+++     + N S+IA P+
Subjt:  KIEAVTGWTRPSTVSRFAVFWFSGLLS---TIVENFSRIATPL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.0e-1237.5Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGS
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DP K+EA+ GW  P   +    F   +G     V+N+ +I  PL  + +K S
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTGWTRPSTVSRFAVF-WFSGLLSTIVENFSRIATPLYSVDQKGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCACAGTCTTATTCGTT
AAGAAGAGACGGATCGATGCGTCTGTGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTGTTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGTTCGGGATACCATCAGCTGAGAATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCGGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATCGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACACGAGGAGCACTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGT
TTTGGCTAAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAACTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTAGGTTCGCAGTTTTCTGGTTTAGCGGGCTATTATCGACGATTGTAGAGAACTTTTCTCGTATAGCTACTCCTCTTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTG
TTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCACAGTCTTATTCGTT
AAGAAGAGACGGATCGATGCGTCTGTGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATTGACGATCTGTTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGTTCGGGATACCATCAGCTGAGAATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGGTATGGACACTAC
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCGGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATCGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACACGAGGAGCACTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGT
TTTGGCTAAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAACTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTAGGTTCGCAGTTTTCTGGTTTAGCGGGCTATTATCGACGATTGTAGAGAACTTTTCTCGTATAGCTACTCCTCTTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTG
TTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAG
Protein sequenceShow/hide protein sequence
MAPAELKELKVQLQELLDKGFIRPSVSPWGAPQSYSLRRDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHY
EFIVMSFGLTNARAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTGWTRPSTV
SRFAVFWFSGLLSTIVENFSRIATPLYSVDQKGSSFCFGARHVRTVSRPLNRS