CuGenDBv2

Gene ID	Cmc04g0094791
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:7792658..7793858
RNA-Seq Expression	Cmc04g0094791
Synteny	Cmc04g0094791
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.5e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.5e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]

9.5e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.5e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

TYK01991.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.5e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

4.6e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

A0A5A7U2V7 Reverse transcriptase

4.6e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

A0A5A7UNA3 Reverse transcriptase

4.6e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

A0A5A7UUL6 Reverse transcriptase

4.6e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

A0A5D3BHI1 Reverse transcriptase

4.6e-203

89.5

Show/hide

Query:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVS WGAPVLF++KKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRG ALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG
        TAFRTRY HYEFRVMPF LTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEH  +        +LY K                 +SAKG
Subjt:  TAFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFY------RLYMK----------------NISAKG

Query:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVD QKVEA+VNWERPISATEVRSFLGLAGYYRRFIEDFS+LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        GCVLMQDGNVI+YASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF QKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

7.8e-75

36.25

Show/hide

Query:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKT
        +E++ Q+Q+++++G IR S S + +P+  + KK         R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKT

Query:  AFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGL-FYRLYMKNISAK---------------------GV
        AF T++ HYE+  MPF L NAPA F   MN I    L++  +V++DDI+V+S   + H +  GL F +L   N+  +                     G+
Subjt:  AFRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGL-FYRLYMKNISAK---------------------GV

Query:  SVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
          + +K+EAI  +  P    E+++FLGL GYYR+FI +F+ +A P+T   +KN+K + ++ + + +F++LK  +   PIL +P   K + +  DAS + L
Subjt:  SVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        G VL QDG+ +SY SR L EHE NY T + EL A+V A K +RHYL G    I +DH+ L +++  K+ N +  RW   + ++D  I+Y  GK N VADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

P20825 Retrovirus-related Pol polyprotein from transposon 297

4.8e-72

37.25

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Query:  ELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTA
        E++ Q+QE++++G IR S S + +P   + KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  G+HQ+++ E  I+KTA
Subjt:  ELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTA

Query:  FRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH-EEHRGLFYRLYMKN---------------------ISAKGVS
        F T+  HYE+  MPF L NAPA F   MN I    L++  +V++DDI+++S     H    + +F +L   N                     ++  G+ 
Subjt:  FRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESH-EEHRGLFYRLYMKN---------------------ISAKGVS

Query:  VDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
         +  KV+AIV++  P    E+R+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+  DAS L L
Subjt:  VDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA
        G VL Q+G+ IS+ SR L +HE NY   + EL A+V A K +RHYL G +  I +DH+ L+++   KE   +  RW   + +Y   I+Y  GK N VADA
Subjt:  GCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.9e-65

37.41

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Query:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTAFRTR
        +E+   +Q+L+D  +I PS S   +PV+ + KKDGT RLC+DYR LNK TI + +PLPRID+L  ++    +F+ +DL SGYHQ+ +   D  KTAF T 
Subjt:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTAFRTR

Query:  YRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRG-LFYRLYMKNISAK--------------GVSVDAQKV-----
           YE+ VMPF L NAP+ F   M   F     +FV V++DDIL++S   E H +H   +  RL  +N+  K              G S+  QK+     
Subjt:  YRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRG-LFYRLYMKNISAK--------------GVSVDAQKV-----

Query:  --EAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM
           AI ++  P +  + + FLG+  YYRRFI + S++A P+        K +W++K +++ ++LK  L  +P+L +P   K +Y +  DAS+ G+G VL 
Subjt:  --EAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM

Query:  QDGN------VISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVAD
        +  N      V+ Y S+ L+  + NYP  +LEL  ++ AL  +R+ L G+   + TDH SL  +  + E   R +RWL+ +  YD T+EY  G  NVVAD
Subjt:  QDGN------VISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVAD

Query:  A
        A
Subjt:  A

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

9.3e-68

35.99

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Query:  ELKMQLQELVDKGYIRPSVSLWGAPVLFMEKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTA
        E++ Q+ EL+  G IRPS S + +P+  + KK     +   R+ +D+++LN VTI + YP+P I+     L     F+ +DL SG+HQ+ ++ESDI KTA
Subjt:  ELKMQLQELVDKGYIRPSVSLWGAPVLFMEKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTA

Query:  FRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFYRLYMKN----------------------ISAKGVS
        F T    YEF  +PF L NAPA+F  +++ I   ++ +   V+IDDI+V+S D ++H ++  L      K                       ++A G+ 
Subjt:  FRTRYRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFYRLYMKN----------------------ISAKGVS

Query:  VDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR---KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVI
         D +KV AI     P S  E++ FLG+  YYR+FI+D++++A PLT LTR    N+K   S K          QSF +LK  L ++ ILA P   K + +
Subjt:  VDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTR---KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVI

Query:  YCDASRLGLGCVLMQD----GNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGE-KCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCT
          DAS   +G VL QD       I+Y SR L + E NY T + E+ A++ +L   R YL+G     ++TDH+ L +    +  N + +RW   I++Y+C 
Subjt:  YCDASRLGLGCVLMQD----GNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGE-KCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCT

Query:  IEYHPGKANVVADA
        + Y PGK+NVVADA
Subjt:  IEYHPGKANVVADA

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.3e-65

37.41

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Query:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTAFRTR
        +E+   +Q+L+D  +I PS S   +PV+ + KKDGT RLC+DYR LNK TI + +PLPRID+L  ++    +F+ +DL SGYHQ+ +   D  KTAF T 
Subjt:  KELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTAFRTR

Query:  YRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRG-LFYRLYMKNISAK--------------GVSVDAQKV-----
           YE+ VMPF L NAP+ F   M   F     +FV V++DDIL++S   E H +H   +  RL  +N+  K              G S+  QK+     
Subjt:  YRHYEFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRG-LFYRLYMKNISAK--------------GVSVDAQKV-----

Query:  --EAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM
           AI ++  P +  + + FLG+  YYRRFI + S++A P+        K +W++K +++  +LK  L  +P+L +P   K +Y +  DAS+ G+G VL 
Subjt:  --EAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM

Query:  QDGN------VISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVAD
        +  N      V+ Y S+ L+  + NYP  +LEL  ++ AL  +R+ L G+   + TDH SL  +  + E   R +RWL+ +  YD T+EY  G  NVVAD
Subjt:  QDGN------VISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVAD

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.8e-18

46.59

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Query:  ISAKGVSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALP
        IS +GVS D  K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W++    +F+ LK  + T P+LALP
Subjt:  ISAKGVSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALP

Sequences

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CDS sequence

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ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCTGTGGGGAGCACCAGTGCTTTTTATGGA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGTAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTAGAACGAGGTATAGGCATTAT
GAGTTTCGAGTTATGCCATTCGATTTAACGAATGCGCCAGCGGTTTTCATGGATCTTATGAACAGAATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCGGTTGACAGAGAATCTCATGAGGAACATCGAGGATTGTTCTACAGACTCTACATGAAAAATATTTCAGCAAAAGGAGTTAGTGTCGATGCAC
AAAAAGTAGAAGCAATTGTCAATTGGGAAAGACCAATTAGTGCCACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCAA
TTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTAT
TTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGAAATGTAATATCTTATGCTTCAA
GGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCAT
ATTTTCACAGATCATAAAAGCCTGAAGTATATTTTTTATCAAAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTA
TCATCCAGGTAAGGCCAACGTAGTAGCAGATGCATAA

mRNA sequence

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Protein sequence

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MAPSELKELKMQLQELVDKGYIRPSVSLWGAPVLFMEKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGVALFSKIDLRSGYHQLKVRESDIAKTAFRTRYRHY
EFRVMPFDLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHRGLFYRLYMKNISAKGVSVDAQKVEAIVNWERPISATEVRSFLGLAGYYRRFIEDFSQ
LALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVISYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCH
IFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADA

Cmc04g0094791 (gene) of Melon (Charmono) v1.1 genome