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Cmc04g0095491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0095491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr04:8965820..8966146
RNA-Seq ExpressionCmc04g0095491
SyntenyCmc04g0095491
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025871.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.4e-4493.94Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        +LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTS KSCITPMSTS DLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNRV
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
TYJ95794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-5098.15Show/hide
Query:  MTSLSLDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT
        MTSLSLDLELALEFKISD DPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT
Subjt:  MTSLSLDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT

Query:  AFSVNRVS
        AFSVNRV+
Subjt:  AFSVNRVS
TYJ96936.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.8e-4392.93Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        +LALEFKIS+L PLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNR+
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
TYK19790.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.3e-4393Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
        +L LEFKISDL PLKYFL LEIQSSIDGIFVNQAKYL DLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPN AFSVN VS
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
XP_016901810.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]2.0e-4494Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
        +LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTS KSCITPMSTS DLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNRVS
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
TrEMBL top hitse value%identityAlignment
A0A1S4E1E5 uncharacterized mitochondrial protein AtMg00810-like9.5e-4594Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
        +LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTS KSCITPMSTS DLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNRVS
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
A0A5D3BA30 Putative mitochondrial protein5.2e-5198.15Show/hide
Query:  MTSLSLDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT
        MTSLSLDLELALEFKISD DPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT
Subjt:  MTSLSLDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNT

Query:  AFSVNRVS
        AFSVNRV+
Subjt:  AFSVNRVS
A0A5D3BD76 Putative mitochondrial protein1.4e-4392.93Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        +LALEFKIS+L PLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNR+
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
A0A5D3D8K1 Putative mitochondrial protein4.0e-4393Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
        +L LEFKISDL PLKYFL LEIQSSIDGIFVNQAKYL DLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPN AFSVN VS
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
A0A5D3DGC2 Putative mitochondrial protein2.1e-4493.94Show/hide
Query:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        +LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYL DLLHTSGMTS KSCITPMSTS DLYTIAPPFNDPSLYRRLVGSLQYLTFTRP+ AFSVNRV
Subjt:  ELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
SwissProt top hitse value%identityAlignment
P04146 Copia protein1.7e-0627.84Show/hide
Query:  EFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTF-TRPNTAFSVNRVS
        +F+++DL+ +K+F+G+ I+   D I+++Q+ Y+K +L    M +  +  TP+ + ++   +    +  +  R L+G L Y+   TRP+   +VN +S
Subjt:  EFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTF-TRPNTAFSVNRVS
P92519 Uncharacterized mitochondrial protein AtMg008106.9e-1639.22Show/hide
Query:  LDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVN
        L  +L+  F + DL P+ YFLG++I++   G+F++Q KY + +L+ +GM   K   TP+   L+       + DPS +R +VG+LQYLT TRP+ +++VN
Subjt:  LDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVN

Query:  RV
         V
Subjt:  RV
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.4e-1543.56Show/hide
Query:  LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTS--LDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        L+  F + D + L YFLG+E +    G+ ++Q +Y+ DLL  + M +AK   TPM+ S  L LY+      DP+ YR +VGSLQYL FTRP+ +++VNR+
Subjt:  LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTS--LDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV

Query:  S
        S
Subjt:  S
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.8e-1442.57Show/hide
Query:  LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTS--LDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV
        L+  F + + + L YFLG+E +    G+ ++Q +Y  DLL  + M +AK   TPM+TS  L L++      DP+ YR +VGSLQYL FTRP+ +++VNR+
Subjt:  LALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTS--LDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRV

Query:  S
        S
Subjt:  S
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.6e-1545.83Show/hide
Query:  FKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYT-IAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
        FK+ DL PLKYFLGLEI  S  GI + Q KY  DLL  +G+   K    PM  S+         F D   YRRL+G L YL  TR + +F+VN++S
Subjt:  FKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYT-IAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVNRVS
ATMG00810.1 DNA/RNA polymerases superfamily protein4.9e-1739.22Show/hide
Query:  LDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVN
        L  +L+  F + DL P+ YFLG++I++   G+F++Q KY + +L+ +GM   K   TP+   L+       + DPS +R +VG+LQYLT TRP+ +++VN
Subjt:  LDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVN

Query:  RV
         V
Subjt:  RV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCATTGTCACTGGACCTGGAATTGGCCCTGGAATTCAAAATATCCGACCTTGATCCTTTAAAGTACTTTCTTGGTCTCGAAATCCAATCCTCTATTGAT
GGCATATTTGTTAACCAAGCTAAATATCTCAAAGATCTCCTCCACACATCGGGAATGACCTCTGCCAAATCTTGTATCACACCAATGTCTACTTCTCTTGATCTT
TATACAATTGCACCACCATTTAATGATCCATCACTTTATCGCAGACTAGTTGGTTCCTTGCAATATCTTACCTTCACTCGTCCTAATACTGCATTCTCTGTAAAT
CGTGTCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCATTGTCACTGGACCTGGAATTGGCCCTGGAATTCAAAATATCCGACCTTGATCCTTTAAAGTACTTTCTTGGTCTCGAAATCCAATCCTCTATTGAT
GGCATATTTGTTAACCAAGCTAAATATCTCAAAGATCTCCTCCACACATCGGGAATGACCTCTGCCAAATCTTGTATCACACCAATGTCTACTTCTCTTGATCTT
TATACAATTGCACCACCATTTAATGATCCATCACTTTATCGCAGACTAGTTGGTTCCTTGCAATATCTTACCTTCACTCGTCCTAATACTGCATTCTCTGTAAAT
CGTGTCAGTTAG
Protein sequenceShow/hide protein sequence
MTSLSLDLELALEFKISDLDPLKYFLGLEIQSSIDGIFVNQAKYLKDLLHTSGMTSAKSCITPMSTSLDLYTIAPPFNDPSLYRRLVGSLQYLTFTRPNTAFSVN
RVS