; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0095531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0095531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:9141673..9142942
RNA-Seq ExpressionCmc04g0095531
SyntenyCmc04g0095531
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-14980Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEELK MNDNEVWDLVELPK+ KRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        GNL+EEVFMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
        KNFEMKDM EASYVIGIEIFRDR HGLLGLSQ AYINKVLEKFKM+KCSSSVVPIQKGDKFSLMQCPKNELERNQMETI YASIVGSLLYAQTCTR DIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        F VGMLGRYQSNPGMDHWKAAKKVLRYLQG KDYMLTYKRSDHLE
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

RZB61294.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]1.4e-13860.41Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEE+  M  N VWDLVELPK CKRVGCKWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RI+MALV HYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        G+L E+V+MDQP GF VEGKE M                                               K + +V+YVDDIL+ATND GLL +TK+FLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
         NFEMKDMGEA+YVIGIEIFR+R+ GLLGLSQK YINKVLE+F+M+KCS+S VPIQK DKFSL QCPKN+LER QME I YAS+VGS++YAQTCTRPDIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------
        F  GMLGRYQSNPGM+HWKAAKKVLRYLQGTKD+MLTYKRSDHLE                                                       
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------

Query:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF
                  FISGLGIVDSIA+PL++YCDNS AVFF
Subjt:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF

RZC25410.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]2.6e-14061.1Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEE+  M  N+VWDLVELPK CKRVG KWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        G+L E+V+MDQP GF VEGKE M                                               K + +V+YVDDILLATND GL  +TK+FLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
         NFEMKDMGEASYVIGIEIFR+R+ GLLGLSQKAYINKVLE+F+M+KCS+S VPIQKGDKFSL QCPKN+LER QME IPYAS+VGS++YAQTCTRPDIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------
        F  GMLGRYQSNPGM+HWKAAKKVLRYLQGTKD++LTYKRSDHLE                                                       
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------

Query:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF
                  FISGLGIVDSIA+PL++YCDNS AVFF
Subjt:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF

TYK00088.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.0e-14478.4Show/hide
Query:  MNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNLNEEV
        MND+EVWDLVEL KE KRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AF+NGNL+E++
Subjt:  MNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNLNEEV

Query:  FMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKD
        FMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLSKNFEMKD
Subjt:  FMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKD

Query:  MGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLG
        MGEASYVIGIEIFRDR HGLL LSQKAYINKVL+KFKMDKCSSSVVPI KGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQT TRPDISF VGML 
Subjt:  MGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLG

Query:  RYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        RYQSNPGM+HWKAA KVLRYLQGTKDYMLTYKRSDHL+
Subjt:  RYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

TYK04201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-14980Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEELK MNDNEVWDLVELPK+ KRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        GNL+EEVFMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
        KNFEMKDM EASYVIGIEIFRDR HGLLGLSQ AYINKVLEKFKM+KCSSSVVPIQKGDKFSLMQCPKNELERNQMETI YASIVGSLLYAQTCTR DIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        F VGMLGRYQSNPGMDHWKAAKKVLRYLQG KDYMLTYKRSDHLE
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

TrEMBL top hitse value%identityAlignment
A0A445GJ88 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-13960.41Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEE+  M  N VWDLVELPK CKRVGCKWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RI+MALV HYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        G+L E+V+MDQP GF VEGKE M                                               K + +V+YVDDIL+ATND GLL +TK+FLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
         NFEMKDMGEA+YVIGIEIFR+R+ GLLGLSQK YINKVLE+F+M+KCS+S VPIQK DKFSL QCPKN+LER QME I YAS+VGS++YAQTCTRPDIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------
        F  GMLGRYQSNPGM+HWKAAKKVLRYLQGTKD+MLTYKRSDHLE                                                       
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------

Query:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF
                  FISGLGIVDSIA+PL++YCDNS AVFF
Subjt:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF

A0A445LQ30 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-14061.1Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEE+  M  N+VWDLVELPK CKRVG KWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        G+L E+V+MDQP GF VEGKE M                                               K + +V+YVDDILLATND GL  +TK+FLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
         NFEMKDMGEASYVIGIEIFR+R+ GLLGLSQKAYINKVLE+F+M+KCS+S VPIQKGDKFSL QCPKN+LER QME IPYAS+VGS++YAQTCTRPDIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------
        F  GMLGRYQSNPGM+HWKAAKKVLRYLQGTKD++LTYKRSDHLE                                                       
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEY------------------------------------------------------

Query:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF
                  FISGLGIVDSIA+PL++YCDNS AVFF
Subjt:  ----------FISGLGIVDSIAKPLRIYCDNSVAVFF

A0A5A7UG95 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-15080Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEELK MNDNEVWDLVELPK+ KRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        GNL+EEVFMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
        KNFEMKDM EASYVIGIEIFRDR HGLLGLSQ AYINKVLEKFKM+KCSSSVVPIQKGDKFSLMQCPKNELERNQMETI YASIVGSLLYAQTCTR DIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        F VGMLGRYQSNPGMDHWKAAKKVLRYLQG KDYMLTYKRSDHLE
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

A0A5D3BLU0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-14478.4Show/hide
Query:  MNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNLNEEV
        MND+EVWDLVEL KE KRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AF+NGNL+E++
Subjt:  MNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNLNEEV

Query:  FMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKD
        FMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLSKNFEMKD
Subjt:  FMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKD

Query:  MGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLG
        MGEASYVIGIEIFRDR HGLL LSQKAYINKVL+KFKMDKCSSSVVPI KGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQT TRPDISF VGML 
Subjt:  MGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLG

Query:  RYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        RYQSNPGM+HWKAA KVLRYLQGTKDYMLTYKRSDHL+
Subjt:  RYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

A0A5D3BWW5 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-15080Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        MKEELK MNDNEVWDLVELPK+ KRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELH MDVK AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS
        GNL+EEVFMDQPEGFMVEGKE M                                               K +++V+YVDDILLATNDFGLLCQTKEFLS
Subjt:  GNLNEEVFMDQPEGFMVEGKERM-----------------------------------------------KTLLIVVYVDDILLATNDFGLLCQTKEFLS

Query:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS
        KNFEMKDM EASYVIGIEIFRDR HGLLGLSQ AYINKVLEKFKM+KCSSSVVPIQKGDKFSLMQCPKNELERNQMETI YASIVGSLLYAQTCTR DIS
Subjt:  KNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDIS

Query:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
        F VGMLGRYQSNPGMDHWKAAKKVLRYLQG KDYMLTYKRSDHLE
Subjt:  FVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.4e-5133.43Show/hide
Query:  ELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNL
        EL     N  W + + P+    V  +WVF  K +  GN  RYKARLVA+G+TQK  IDY+ETF+PV++  S R +++LV  Y+L++H MDVK AFLNG L
Subjt:  ELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNL

Query:  NEEVFMDQPEG-----------------------------------------------FMVEGKERMKTLLIVVYVDDILLATNDFGLLCQTKEFLSKNF
         EE++M  P+G                                               ++++     + + +++YVDD+++AT D   +   K +L + F
Subjt:  NEEVFMDQPEG-----------------------------------------------FMVEGKERMKTLLIVVYVDDILLATNDFGLLCQTKEFLSKNF

Query:  EMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVV
         M D+ E  + IGI I  +     + LSQ AY+ K+L KF M+ C++   P+     + L       L  ++    P  S++G L+Y   CTRPD++  V
Subjt:  EMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDISFVV

Query:  GMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEYFISGLGIVDS
         +L RY S    + W+  K+VLRYL+GT D  L +K++   E  I  +G VDS
Subjt:  GMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEYFISGLGIVDS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-7041.11Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        M+EE++ +  N  + LVELPK  + + CKWVFK K+D +  + RYKARLV KG+ QK GID+ E FSPV K  S+R +++L A  DLE+  +DVK AFL+
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERM--------------------------------KT----------------LLIVVYVDDILLATNDFGLLCQTKEFL
        G+L EE++M+QPEGF V GK+ M                                KT                +++++YVDD+L+   D GL+ + K  L
Subjt:  GNLNEEVFMDQPEGFMVEGKERM--------------------------------KT----------------LLIVVYVDDILLATNDFGLLCQTKEFL

Query:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI
        SK+F+MKD+G A  ++G++I R+R    L LSQ+ YI +VLE+F M        P+    K S   CP    E+  M  +PY+S VGSL+YA  CTRPDI
Subjt:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI

Query:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSD
        +  VG++ R+  NPG +HW+A K +LRYL+GT    L +  SD
Subjt:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSD

P25600 Putative transposon Ty5-1 protein YCL074W1.5e-1826.35Show/hide
Query:  MDVKAAFLNGNLNEEVFMDQPEGFMVE-----------GKERMK------------------------------------TLLIVVYVDDILLATNDFGL
        MDV  AFLN  ++E +++ QP GF+ E           G   +K                                     + I VYVDD+L+A     +
Subjt:  MDVKAAFLNGNLNEEVFMDQPEGFMVE-----------GKERMK------------------------------------TLLIVVYVDDILLATNDFGL

Query:  LCQTKEFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYA
          + K+ L+K + MKD+G+    +G+ I +  ++G + LS + YI K   + +++    +  P+           P      +  +  PY SIVG LL+ 
Subjt:  LCQTKEFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYA

Query:  QTCTRPDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEYFISGLGIVDSIAKPLRIYCDNS
            RPDIS+ V +L R+   P   H ++A++VLRYL  T+   L Y+    L                L +YCD S
Subjt:  QTCTRPDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEYFISGLGIVDSIAKPLRIYCDNS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.1e-4434.78Show/hide
Query:  MKEELKFMNDNEVWDLV-ELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFL
        M  E+     N  WDLV   P     VGC+W+F  K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S+RIV+ +       +  +DV  AFL
Subjt:  MKEELKFMNDNEVWDLV-ELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFL

Query:  NGNLNEEVFMDQPEGFMVEGK----------------------------------------------ERMKTLL-IVVYVDDILLATNDFGLLCQTKEFL
         G L ++V+M QP GF+ + +                                              +R K+++ ++VYVDDIL+  ND  LL  T + L
Subjt:  NGNLNEEVFMDQPEGFMVEGK----------------------------------------------ERMKTLL-IVVYVDDILLATNDFGLLCQTKEFL

Query:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI
        S+ F +KD  E  Y +GIE    R    L LSQ+ YI  +L +  M        P+    K SL    K        +   Y  IVGSL Y    TRPDI
Subjt:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI

Query:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHL
        S+ V  L ++   P  +H +A K++LRYL GT ++ +  K+ + L
Subjt:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-4535.07Show/hide
Query:  MKEELKFMNDNEVWDLV-ELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFL
        M  E+     N  WDLV   P     VGC+W+F  K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S+RIV+ +       +  +DV  AFL
Subjt:  MKEELKFMNDNEVWDLV-ELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFL

Query:  NGNLNEEVFMDQPEGFMVEGKE----------------------RMKTLLI-------------------------VVYVDDILLATNDFGLLCQTKEFL
         G L +EV+M QP GF+ + +                        ++T L+                         +VYVDDIL+  ND  LL  T + L
Subjt:  NGNLNEEVFMDQPEGFMVEGKE----------------------RMKTLLI-------------------------VVYVDDILLATNDFGLLCQTKEFL

Query:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI
        S+ F +K+  +  Y +GIE    R    L LSQ+ Y   +L +  M        P+    K +L    K        +   Y  IVGSL Y    TRPD+
Subjt:  SKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTRPDI

Query:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHL
        S+ V  L +Y   P  DHW A K+VLRYL GT D+ +  K+ + L
Subjt:  SFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.5e-4831.52Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN
        M +E+  M     W++  LP   K +GCKWV+K K +S+G IERYKARLVAKGYTQ++GID+ ETFSPV K  S+++++A+ A Y+  LH +D+  AFLN
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLN

Query:  GNLNEEVFMDQPEGFMVEGKERMKT---------------------------------------------------LLIVVYVDDILLATNDFGLLCQTK
        G+L+EE++M  P G+     + +                                                     L ++VYVDDI++ +N+   + + K
Subjt:  GNLNEEVFMDQPEGFMVEGKERMKT---------------------------------------------------LLIVVYVDDILLATNDFGLLCQTK

Query:  EFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTR
          L   F+++D+G   Y +G+EI R  A   + + Q+ Y   +L++  +  C  S VP+     FS           + ++   Y  ++G L+Y Q  TR
Subjt:  EFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCPKNELERNQMETIPYASIVGSLLYAQTCTR

Query:  PDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE
         DISF V  L ++   P + H +A  K+L Y++GT    L Y     ++
Subjt:  PDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE

ATMG00810.1 DNA/RNA polymerases superfamily protein1.4e-1434.16Show/hide
Query:  LLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCS--SSVVPIQKGDKFSLMQCPKNE
        + +++YVDDILL  +   LL      LS  F MKD+G   Y +GI+I +    GL  LSQ  Y  ++L    M  C   S+ +P++     S  + P   
Subjt:  LLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCS--SSVVPIQKGDKFSLMQCPKNE

Query:  LERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGT
              +   + SIVG+L Y  T TRPDIS+ V ++ +    P +  +   K+VLRY++GT
Subjt:  LERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGT

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.2e-1548.1Show/hide
Query:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVM
        M+EEL  ++ N+ W LV  P     +GCKWVFKTK  S+G ++R KARLVAKG+ Q++GI + ET+SPV +  ++R ++
Subjt:  MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGAGTTAAAATTTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAATGTAAAAGAGTTGGGTGTAAATGGGTCTTTAAGACCAAACGTGA
CTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACATTTTCTCCTGTCTCGAAAAAGGATT
CATTAAGAATTGTTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCTAATGGATGTGAAAGCTGCCTTTCTAAATGGAAATTTAAATGAAGAAGTGTTCATGGAT
CAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACGTATGAAAACATTGTTGATAGTTGTATATGTTGATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCA
AACCAAAGAATTTCTTTCTAAAAACTTTGAAATGAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCCGTGACCGAGCACATGGATTGTTAGGATTGT
CTCAAAAAGCCTATATTAATAAAGTTTTAGAGAAATTTAAGATGGACAAATGCTCTTCAAGTGTAGTTCCAATTCAGAAGGGAGATAAATTTAGTCTCATGCAATGTCCA
AAAAATGAATTGGAACGAAATCAGATGGAAACTATTCCTTATGCATCTATTGTTGGAAGCTTATTGTATGCACAAACTTGCACTAGGCCAGACATCAGTTTTGTTGTGGG
TATGTTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGATATCTGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGAT
CTGATCATCTTGAGTACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGCTGAGAATTTATTGTGATAATTCTGTAGCAGTTTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGAGTTAAAATTTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAATGTAAAAGAGTTGGGTGTAAATGGGTCTTTAAGACCAAACGTGA
CTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACATTTTCTCCTGTCTCGAAAAAGGATT
CATTAAGAATTGTTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCTAATGGATGTGAAAGCTGCCTTTCTAAATGGAAATTTAAATGAAGAAGTGTTCATGGAT
CAACCAGAAGGTTTTATGGTTGAAGGAAAGGAACGTATGAAAACATTGTTGATAGTTGTATATGTTGATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCA
AACCAAAGAATTTCTTTCTAAAAACTTTGAAATGAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCCGTGACCGAGCACATGGATTGTTAGGATTGT
CTCAAAAAGCCTATATTAATAAAGTTTTAGAGAAATTTAAGATGGACAAATGCTCTTCAAGTGTAGTTCCAATTCAGAAGGGAGATAAATTTAGTCTCATGCAATGTCCA
AAAAATGAATTGGAACGAAATCAGATGGAAACTATTCCTTATGCATCTATTGTTGGAAGCTTATTGTATGCACAAACTTGCACTAGGCCAGACATCAGTTTTGTTGTGGG
TATGTTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGATATCTGCAAGGAACAAAGGATTATATGCTTACTTACAAGAGAT
CTGATCATCTTGAGTACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGCTGAGAATTTATTGTGATAATTCTGTAGCAGTTTTCTTTTAA
Protein sequenceShow/hide protein sequence
MKEELKFMNDNEVWDLVELPKECKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHLMDVKAAFLNGNLNEEVFMD
QPEGFMVEGKERMKTLLIVVYVDDILLATNDFGLLCQTKEFLSKNFEMKDMGEASYVIGIEIFRDRAHGLLGLSQKAYINKVLEKFKMDKCSSSVVPIQKGDKFSLMQCP
KNELERNQMETIPYASIVGSLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEYFISGLGIVDSIAKPLRIYCDNSVAVFF