; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0096351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0096351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr04:10573216..10573914
RNA-Seq ExpressionCmc04g0096351
SyntenyCmc04g0096351
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057179.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-11690.52Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQ IKEE EKD KLMKI  E+NG+ A QDSKFKM NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-11690.09Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+ A QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

KAA0068193.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-11589.66Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-11589.66Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

TYK21518.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-11387.83Show/hide
Query:  TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAV
        T+T PVFLDLQIIKEE EKDI+LMKI  E+N +  QQDSKF +CNGMLKYKDRLVISQSSKLIPQ+LHSYHDSAVGGH GFLRTYKRI+ ELYW+GMK V
Subjt:  TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAV

Query:  IKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVL
        IKKYCAECLICQ+NKTLCLS AGLLLPLNIPTL+WSDISMDFVEGLPKAAGFEVIFVVVDRLSKY HFLPLKHPYSAKT+ +LFVKEVVRLHGFPTSIV 
Subjt:  IKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVL

Query:  DRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  DRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

TrEMBL top hitse value%identityAlignment
A0A5A7V5H5 Ty3/gypsy retrotransposon protein2.0e-11690.09Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+ A QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

A0A5A7VJA0 Ty3/gypsy retrotransposon protein5.8e-11689.66Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

A0A5D3BEL2 Ty3/gypsy retrotransposon protein5.8e-11689.66Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

A0A5D3D5G0 Ty3/gypsy retrotransposon protein1.2e-11690.52Show/hide
Query:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK
        MCTITVPV LDLQ IKEE EKD KLMKI  E+NG+ A QDSKFKM NGMLKYKDRLVISQ+SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMK
Subjt:  MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMK

Query:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI
        AV+KKYCAECLICQQNKTLCLSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKT+ ELFVKEVVRLHGFP SI
Subjt:  AVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSI

Query:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        V DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  VLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

A0A5D3DDC2 Ty3/gypsy retrotransposon protein2.7e-11387.83Show/hide
Query:  TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAV
        T+T PVFLDLQIIKEE EKDI+LMKI  E+N +  QQDSKF +CNGMLKYKDRLVISQSSKLIPQ+LHSYHDSAVGGH GFLRTYKRI+ ELYW+GMK V
Subjt:  TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAV

Query:  IKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVL
        IKKYCAECLICQ+NKTLCLS AGLLLPLNIPTL+WSDISMDFVEGLPKAAGFEVIFVVVDRLSKY HFLPLKHPYSAKT+ +LFVKEVVRLHGFPTSIV 
Subjt:  IKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVL

Query:  DRDRVFLSNFWKEVFRLAGTKLNRSSAYHP
        DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Subjt:  DRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.0e-2429.17Show/hide
Query:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN
        E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+     HPG       I R   W+G++  I++Y   C  CQ N
Subjt:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN

Query:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV
        K+    P G L P+      W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G P  I+ D D +F S  WK+ 
Subjt:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV

Query:  FRLAGTKLNRSSAYHP
               +  S  Y P
Subjt:  FRLAGTKLNRSSAYHP

P0CT35 Transposon Tf2-2 polyprotein1.0e-2429.17Show/hide
Query:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN
        E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+     HPG       I R   W+G++  I++Y   C  CQ N
Subjt:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN

Query:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV
        K+    P G L P+      W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G P  I+ D D +F S  WK+ 
Subjt:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV

Query:  FRLAGTKLNRSSAYHP
               +  S  Y P
Subjt:  FRLAGTKLNRSSAYHP

P0CT36 Transposon Tf2-3 polyprotein1.0e-2429.17Show/hide
Query:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN
        E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+     HPG       I R   W+G++  I++Y   C  CQ N
Subjt:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN

Query:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV
        K+    P G L P+      W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G P  I+ D D +F S  WK+ 
Subjt:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV

Query:  FRLAGTKLNRSSAYHP
               +  S  Y P
Subjt:  FRLAGTKLNRSSAYHP

P0CT41 Transposon Tf2-12 polyprotein1.0e-2429.17Show/hide
Query:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN
        E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+     HPG       I R   W+G++  I++Y   C  CQ N
Subjt:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN

Query:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV
        K+    P G L P+      W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G P  I+ D D +F S  WK+ 
Subjt:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV

Query:  FRLAGTKLNRSSAYHP
               +  S  Y P
Subjt:  FRLAGTKLNRSSAYHP

Q9UR07 Transposon Tf2-11 polyprotein1.0e-2429.17Show/hide
Query:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN
        E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+     HPG       I R   W+G++  I++Y   C  CQ N
Subjt:  EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQN

Query:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV
        K+    P G L P+      W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G P  I+ D D +F S  WK+ 
Subjt:  KTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEV

Query:  FRLAGTKLNRSSAYHP
               +  S  Y P
Subjt:  FRLAGTKLNRSSAYHP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTACCATAACAGTTCCAGTCTTCCTTGATTTACAGATCATTAAAGAAGAGGAGGAGAAAGATATAAAGCTGATGAAAATTACAGTTGAAGTGAATGGCGATAGGGC
TCAACAAGATAGCAAGTTCAAAATGTGTAATGGAATGTTGAAGTACAAAGATCGGTTGGTAATATCACAGTCGTCCAAATTGATACCACAGATATTACATAGCTATCATG
ACTCGGCAGTGGGAGGGCATCCAGGTTTTCTTCGTACTTATAAACGTATTTCGAGAGAATTATATTGGCAAGGCATGAAGGCTGTTATCAAGAAATATTGTGCCGAATGT
TTGATCTGCCAACAAAACAAGACTTTATGCCTATCACCAGCAGGCCTATTACTTCCATTAAACATCCCTACACTAGTCTGGAGTGATATATCTATGGATTTCGTGGAGGG
ACTGCCTAAAGCAGCTGGTTTCGAAGTCATTTTTGTGGTAGTAGACCGGTTAAGTAAGTATGGTCATTTCTTGCCACTAAAACATCCTTATTCAGCAAAGACAATGGAAG
AGTTATTTGTCAAGGAGGTGGTTCGGCTACATGGATTTCCTACTTCCATTGTATTGGATAGAGATCGGGTGTTCCTTAGTAATTTTTGGAAGGAAGTGTTCCGTTTGGCG
GGTACGAAACTAAATAGAAGTTCAGCGTATCATCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTACCATAACAGTTCCAGTCTTCCTTGATTTACAGATCATTAAAGAAGAGGAGGAGAAAGATATAAAGCTGATGAAAATTACAGTTGAAGTGAATGGCGATAGGGC
TCAACAAGATAGCAAGTTCAAAATGTGTAATGGAATGTTGAAGTACAAAGATCGGTTGGTAATATCACAGTCGTCCAAATTGATACCACAGATATTACATAGCTATCATG
ACTCGGCAGTGGGAGGGCATCCAGGTTTTCTTCGTACTTATAAACGTATTTCGAGAGAATTATATTGGCAAGGCATGAAGGCTGTTATCAAGAAATATTGTGCCGAATGT
TTGATCTGCCAACAAAACAAGACTTTATGCCTATCACCAGCAGGCCTATTACTTCCATTAAACATCCCTACACTAGTCTGGAGTGATATATCTATGGATTTCGTGGAGGG
ACTGCCTAAAGCAGCTGGTTTCGAAGTCATTTTTGTGGTAGTAGACCGGTTAAGTAAGTATGGTCATTTCTTGCCACTAAAACATCCTTATTCAGCAAAGACAATGGAAG
AGTTATTTGTCAAGGAGGTGGTTCGGCTACATGGATTTCCTACTTCCATTGTATTGGATAGAGATCGGGTGTTCCTTAGTAATTTTTGGAAGGAAGTGTTCCGTTTGGCG
GGTACGAAACTAAATAGAAGTTCAGCGTATCATCCGTAA
Protein sequenceShow/hide protein sequence
MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAEC
LICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLA
GTKLNRSSAYHP