CuGenDBv2

Gene ID	Cmc04g0096361
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr04:10573972..10574862
RNA-Seq Expression	Cmc04g0096361
Synteny	Cmc04g0096361
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0057179.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-153

93.15

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLED+LKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-153

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

KAA0065392.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.6e-151

90.75

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M+D DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLR+FVLVFFDDILIYSRN EDHLKH+EIVFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAIT+ PKPTNVRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGF WNAEAEQAFEKLK+ MIALP+LALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYG+ AVLIQNKRPIAFYSHTLA RDRGRPVYERELMAVVLAVQRWRPYLLGNRF+VRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

KAA0068193.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-153

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-153

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMQ7 Ty3/gypsy retrotransposon protein

3.2e-151

90.75

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M+D DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLR+FVLVFFDDILIYSRN EDHLKH+EIVFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAIT+ PKPTNVRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGF WNAEAEQAFEKLK+ MIALP+LALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYG+ AVLIQNKRPIAFYSHTLA RDRGRPVYERELMAVVLAVQRWRPYLLGNRF+VRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

A0A5A7V5H5 Ty3/gypsy retrotransposon protein

5.3e-154

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

A0A5A7VJA0 Ty3/gypsy retrotransposon protein

5.3e-154

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

A0A5D3BEL2 Ty3/gypsy retrotransposon protein

5.3e-154

93.49

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

A0A5D3D5G0 Ty3/gypsy retrotransposon protein

2.6e-153

93.15

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        MID DIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLED+LKHIE VFLVLRKHELFAN KKCSFGLA+VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET
        GHLIS+KGVE+DP+KIKAITD PKPT+VRETRGFLGLTGYYRKFVHHYGT AAPLTQLLKKGGFNWN EAEQAFEKLKK MIALPVLALPMFDKPFEIET
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIET

Query:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        DASGYGV AVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRT++KSLKFLLEQRVVQPQYQRWLAKL G  F
Subjt:  DASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.1e-59

41.16

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M  E + KTAF T  GHYE+L MPFGL N PATFQ  MN I RP L +  LV+ DDI+++S +L++HL+ + +VF  L K  L     KC F      +L
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGG--FNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEI
        GH+++  G++ +P+KI+AI   P PT  +E + FLGLTGYYRKF+ ++   A P+T+ LKK       N E + AF+KLK ++   P+L +P F K F +
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGG--FNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEI

Query:  ETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
         TDAS   + AVL Q+  P+++ S TL   +      E+EL+A+V A + +R YLLG  F + ++ + L +L   +    +  RW  KLS   F
Subjt:  ETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

5.4e-47

35.35

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        + + D EKT+F  + G YEF  +PFGL N  + FQ  ++ + R  + +   V+ DD++I+S N  DH++HI+ V   L    +  + +K  F    VEYL
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLL------------KKGGFNWNAEAEQAFEKLKKVMIALPV-L
        G ++S  G + DP+K+KAI + P+P  V + R FLGL  YYR F+  +   A P+T +L            KK    +N     AF++L+ ++ +  V L
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLL------------KKGGFNWNAEAEQAFEKLKKVMIALPV-L

Query:  ALPMFDKPFEIETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFI-VRTNKKSLKFLLEQRVVQPQYQRW
          P F KPF++ TDAS  G+ AVL Q  RPI   S TL   ++     EREL+A+V A+ + + +L G+R I + T+ + L F +  R    + +RW
Subjt:  ALPMFDKPFEIETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFI-VRTNKKSLKFLLEQRVVQPQYQRW

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.4e-63

43.73

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M +E I KTAF T  GHYE+L MPFGL N PATFQ  MN+I RP L +  LV+ DDI+I+S +L +HL  I++VF  L    L     KC F      +L
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGG--FNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEI
        GH+++  G++ +P K+KAI   P PT  +E R FLGLTGYYRKF+ +Y   A P+T  LKK         E  +AFEKLK ++I  P+L LP F+K F +
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGG--FNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEI

Query:  ETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHFR
         TDAS   + AVL QN  PI+F S TL   +      E+EL+A+V A + +R YLLG +F++ ++ + L++L   +    + +RW  +LS   F+
Subjt:  ETDASGYGVEAVLIQNKRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHFR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

9.0e-42

36.45

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M  +D  KTAF T  G YE+ VMPFGL N P+TF   M   FR    RFV V+ DDILI+S + E+H KH++ V   L+   L    KKC F     E+L
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKP-FEIE
        G+ I  + +     K  AI D P P  V++ + FLG+  YYR+F+ +    A P+ QL       W  + ++A EKLK  +   PVL +P  +K  + + 
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKP-FEIE

Query:  TDASGYGVEAVL--IQNKRP----IAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF
        TDAS  G+ AVL  + NK      + ++S +L    +  P  E EL+ ++ A+  +R  L G  F +RT+  SL  L  +     + QRWL  L+   F
Subjt:  TDASGYGVEAVL--IQNKRP----IAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.3e-53

37.17

Show/hide

Query:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL
        M + DI KTAF T  G YEFL +PFGL N PA FQ +++ I R ++ +   V+ DDI+++S + + H K++ +V   L K  L  N +K  F   +VE+L
Subjt:  MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYL

Query:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLK------------KGGFNWNAEAEQAFEKLKKVMIALPVLA
        G+++++ G++ DPKK++AI++ P PT+V+E + FLG+T YYRKF+  Y   A PLT L +            K     +  A Q+F  LK ++ +  +LA
Subjt:  GHLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLK------------KGGFNWNAEAEQAFEKLKKVMIALPVLA

Query:  LPMFDKPFEIETDASGYGVEAVLIQN----KRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFI-VRTNKKSLKFLLEQRVVQPQYQRW
         P F KPF + TDAS + + AVL Q+     RPIA+ S +L   +      E+E++A++ ++   R YL G   I V T+ + L F L  R    + +RW
Subjt:  LPMFDKPFEIETDASGYGVEAVLIQN----KRPIAFYSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFI-VRTNKKSLKFLLEQRVVQPQYQRW

Query:  LAKL
         A++
Subjt:  LAKL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.6e-31

48.09

Show/hide

Query:  LKHIEIVFLVLRKHELFANWKKCSFGLARVEYLG--HLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFN
        + H+ +V  +  +H+ +AN KKC+FG  ++ YLG  H+IS +GV  DP K++A+   P+P N  E RGFLGLTGYYR+FV +YG    PLT+LLKK    
Subjt:  LKHIEIVFLVLRKHELFANWKKCSFGLARVEYLG--HLISSKGVELDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFN

Query:  WNAEAEQAFEKLKKVMIALPVLALPMFDKPF
        W   A  AF+ LK  +  LPVLALP    PF
Subjt:  WNAEAEQAFEKLKKVMIALPVLALPMFDKPF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATAGATGAGGACATTGAGAAGACCGCCTTCCGAACACATGAAGGACATTATGAATTCTTAGTGATGCCTTTCGGGCTCACTAACGTACCGGCCACCTTCCAATCCTT
GATGAATTCGATCTTCAGACCATACTTGAGAAGGTTTGTCCTCGTTTTCTTTGATGATATATTAATCTACAGTCGAAATCTGGAAGATCATTTGAAACATATAGAGATTG
TTTTCTTAGTGCTACGAAAACACGAGTTGTTCGCAAACTGGAAGAAATGTAGCTTTGGCTTGGCTAGAGTAGAGTATCTGGGACATCTTATATCGAGCAAAGGTGTAGAA
TTGGATCCAAAAAAAATCAAAGCCATAACTGATCGGCCTAAACCAACAAATGTACGTGAGACACGAGGTTTCCTTGGATTGACGGGATACTACAGAAAATTTGTACATCA
CTATGGCACCTTCGCAGCCCCACTAACCCAGTTACTTAAGAAAGGAGGGTTTAATTGGAATGCGGAGGCAGAACAAGCGTTTGAAAAGCTAAAAAAAGTAATGATAGCTT
TACCGGTATTAGCCTTACCTATGTTTGATAAACCATTTGAGATTGAAACTGACGCCTCAGGTTATGGAGTAGAAGCTGTTTTAATACAAAATAAGCGTCCCATCGCGTTT
TACAGCCACACACTAGCCATTAGAGACAGGGGCAGACCAGTGTATGAACGGGAATTGATGGCTGTGGTACTAGCTGTGCAGCGTTGGCGCCCTTATCTGTTGGGCAATCG
ATTCATTGTGCGGACGAATAAAAAATCGCTGAAGTTCCTATTAGAGCAGCGAGTGGTACAACCACAATATCAAAGATGGTTAGCTAAGTTGTCGGGGGTACACTTTCGAC
GTGGAATATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIDEDIEKTAFRTHEGHYEFLVMPFGLTNVPATFQSLMNSIFRPYLRRFVLVFFDDILIYSRNLEDHLKHIEIVFLVLRKHELFANWKKCSFGLARVEYLGHLISSKGVE
LDPKKIKAITDRPKPTNVRETRGFLGLTGYYRKFVHHYGTFAAPLTQLLKKGGFNWNAEAEQAFEKLKKVMIALPVLALPMFDKPFEIETDASGYGVEAVLIQNKRPIAF
YSHTLAIRDRGRPVYERELMAVVLAVQRWRPYLLGNRFIVRTNKKSLKFLLEQRVVQPQYQRWLAKLSGVHFRRGI

Cmc04g0096361 (gene) of Melon (Charmono) v1.1 genome