; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0096661 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0096661
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr04:11098791..11099657
RNA-Seq ExpressionCmc04g0096661
SyntenyCmc04g0096661
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042994.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.0e-11172.92Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPKGFI+SE P+HV KLNK LYGLKQ  RAWYD+LT YL  +GYSR   DKTLF+H  +D L+VAQIYVDDIIFGGFPQDL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        ++NFI+IM+SEFEMSMVGE  C LGLQIKQ+++ IFISQEKY +++VKKFGLEQ+Q+K TPA    K+TKDT    VDHKLY+SI+GSLLYLTA+R DIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLIS
        YA+GICAR+Q+DPR +HLE VKRI+KYIHG SDFG++Y Y+TT  LVGYCD DW+ S+DDRKST    FFLGNNLIS
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLIS

KAA0053124.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-15096.74Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHV KLNKPLYGLKQA  AWYDQLTIYLSCKGYSRCGADKTLFVHI NDNLIVAQIYVDDIIFGGFPQDL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIAYAI
        INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTN TIVDHKLYKSIIGSLLYLTANRPDIAYAI
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIAYAI

Query:  GICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWL
        GICARFQSDPRTSHLE VKRIIKYIHGISDFGILYFY TTSILVGYCDVDWVGSSD+RKSTFEE FFLGNNLISWL
Subjt:  GICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWL

KAA0054623.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.9e-11774.14Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPK FIDSEFP  + KLNK LYGLKQA   WY+QLT+YL  +GYSR   DKTL ++  + +LIVAQIYVDDIIFGGFP+ L
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        +NNFI+IM SEFEMS+VGE SC LGLQIKQRSE +F+SQEKY KN+VKKFGL+QSQ+K TPA   AKITKDT  T VDHKLY+S+IGS LYL A+RPDIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT
        YA+ ICAR+QSDP TSHL  VKRIIKY+HG +DFGILY YDT S LVGYCD DW GS+DDRKST    FFLGNNL+SW SKKQNCVSL T
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT

TYK23188.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.2e-11871.72Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPK F+DSE P+HV KLNK LYGLKQA R WY++LT+YL  KGYSR   DKTLF+H  +D L+VAQIYVDDIIFGGFP DL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        +NNFI+IM+SEFEMSMVGE SC LG QIKQ+++ I ISQ+KY KN+ KKFGLEQ+++K TPAA   K+T+D +   VDHKLY+SI+ +LLYLTA+RPDIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT
        YA+GICAR+Q+DPR SHLE VKRI+KY+HG +DFG++Y YDTT  LVGYCD DW G +DDRKST    FFLGNNLI WLSKKQNCVSL T
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT

TYK29824.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]2.2e-12276.63Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPKGF+DSEFPQHV KLNK LYGLKQA RAWY +LTIYL  KGYSR G  KTLF++  +  LI+AQIYVDDIIFGGFP+  
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        I NFI+IMKSEFEMSMVGE SC LGLQIKQR  SIFISQEKY KN+VKKFGL+Q QHK T  A   K+TKD N T+VDHKLY+S++GSLLYL A++ DIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA
        YA+GICARFQSDPRTSHL VVKRI+KY+HG SDFGILY +DTTS LVGYCD DW GS DDRKST    FF+GNNLISW SKKQNCVSL TA
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA

TrEMBL top hitse value%identityAlignment
A0A5A7TI28 Putative gag-pol polyprotein4.9e-11272.92Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPKGFI+SE P+HV KLNK LYGLKQ  RAWYD+LT YL  +GYSR   DKTLF+H  +D L+VAQIYVDDIIFGGFPQDL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        ++NFI+IM+SEFEMSMVGE  C LGLQIKQ+++ IFISQEKY +++VKKFGLEQ+Q+K TPA    K+TKDT    VDHKLY+SI+GSLLYLTA+R DIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLIS
        YA+GICAR+Q+DPR +HLE VKRI+KYIHG SDFG++Y Y+TT  LVGYCD DW+ S+DDRKST    FFLGNNLIS
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLIS

A0A5A7UCZ0 Putative gag-pol polyprotein9.1e-15196.74Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHV KLNKPLYGLKQA  AWYDQLTIYLSCKGYSRCGADKTLFVHI NDNLIVAQIYVDDIIFGGFPQDL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIAYAI
        INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTN TIVDHKLYKSIIGSLLYLTANRPDIAYAI
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIAYAI

Query:  GICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWL
        GICARFQSDPRTSHLE VKRIIKYIHGISDFGILYFY TTSILVGYCDVDWVGSSD+RKSTFEE FFLGNNLISWL
Subjt:  GICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWL

A0A5A7UF87 Putative mitochondrial protein3.8e-11774.14Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPK FIDSEFP  + KLNK LYGLKQA   WY+QLT+YL  +GYSR   DKTL ++  + +LIVAQIYVDDIIFGGFP+ L
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        +NNFI+IM SEFEMS+VGE SC LGLQIKQRSE +F+SQEKY KN+VKKFGL+QSQ+K TPA   AKITKDT  T VDHKLY+S+IGS LYL A+RPDIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPA---AKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT
        YA+ ICAR+QSDP TSHL  VKRIIKY+HG +DFGILY YDT S LVGYCD DW GS+DDRKST    FFLGNNL+SW SKKQNCVSL T
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT

A0A5D3DI97 Gag-pol polyprotein3.5e-11871.72Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPK F+DSE P+HV KLNK LYGLKQA R WY++LT+YL  KGYSR   DKTLF+H  +D L+VAQIYVDDIIFGGFP DL
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        +NNFI+IM+SEFEMSMVGE SC LG QIKQ+++ I ISQ+KY KN+ KKFGLEQ+++K TPAA   K+T+D +   VDHKLY+SI+ +LLYLTA+RPDIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT
        YA+GICAR+Q+DPR SHLE VKRI+KY+HG +DFG++Y YDTT  LVGYCD DW G +DDRKST    FFLGNNLI WLSKKQNCVSL T
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT

A0A5D3E1T0 Putative gag-pol polyprotein1.0e-12276.63Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        MDVKSAFLNGYLNEEV VAQPKGF+DSEFPQHV KLNK LYGLKQA RAWY +LTIYL  KGYSR G  KTLF++  +  LI+AQIYVDDIIFGGFP+  
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        I NFI+IMKSEFEMSMVGE SC LGLQIKQR  SIFISQEKY KN+VKKFGL+Q QHK T  A   K+TKD N T+VDHKLY+S++GSLLYL A++ DIA
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA
        YA+GICARFQSDPRTSHL VVKRI+KY+HG SDFGILY +DTTS LVGYCD DW GS DDRKST    FF+GNNLISW SKKQNCVSL TA
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA

SwissProt top hitse value%identityAlignment
P04146 Copia protein8.2e-4033Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFV---HIMNDNLIVAQIYVDDIIFGGFP
        MDVK+AFLNG L EE+ +  P+G   S    +VCKLNK +YGLKQA R W++     L    +     D+ +++     +N+N+ V  +YVDD++     
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFV---HIMNDNLIVAQIYVDDIIFGGFP

Query:  QDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAK------ITKDTNCTIVDHKLYKSIIGSLLY-LT
           +NNF   +  +F M+ + E    +G++I+ + + I++SQ  Y K I+ KF +E     STP         +  D +C    +   +S+IG L+Y + 
Subjt:  QDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAK------ITKDTNCTIVDHKLYKSIIGSLLY-LT

Query:  ANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTT--SILVGYCDVDWVGSSDDRKSTFEERFFLGN-NLISWLSKKQNCVS
          RPD+  A+ I +R+ S   +   + +KR+++Y+ G  D  +++  +    + ++GY D DW GS  DRKST    F + + NLI W +K+QN V+
Subjt:  ANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTT--SILVGYCDVDWVGSSDDRKSTFEERFFLGN-NLISWLSKKQNCVS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-4737Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTL-FVHIMNDNLIVAQIYVDDIIFGGFPQD
        +DVK+AFL+G L EE+ + QP+GF  +     VCKLNK LYGLKQA R WY +   ++  + Y +  +D  + F     +N I+  +YVDD++  G  + 
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTL-FVHIMNDNLIVAQIYVDDIIFGGFPQD

Query:  LINNFIDIMKSEFEMSMVGEFSCLLGLQI--KQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHK------LYKSIIGSLLY
        LI      +   F+M  +G    +LG++I  ++ S  +++SQEKY + ++++F ++ ++  STP A   K++K    T V+ K       Y S +GSL+Y
Subjt:  LINNFIDIMKSEFEMSMVGEFSCLLGLQI--KQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHK------LYKSIIGSLLY

Query:  -LTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT
         +   RPDIA+A+G+ +RF  +P   H E VK I++Y+ G +    L F  +  IL GY D D  G  D+RKS+    F      ISW SK Q CV+L T
Subjt:  -LTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFT

P92519 Uncharacterized mitochondrial protein AtMg008105.5e-2834.33Show/hide
Query:  IYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTP-AAKITKD-TNCTIVDHKLYKSII
        +YVDDI+  G    L+N  I  + S F M  +G     LG+QIK     +F+SQ KY + I+   G+   +  STP   K+    +     D   ++SI+
Subjt:  IYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTP-AAKITKD-TNCTIVDHKLYKSII

Query:  GSLLYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV
        G+L YLT  RPDI+YA+ I  +   +P  +  +++KR+++Y+ G    G+    ++   +  +CD DW G +  R+ST     FLG N+ISW +K+Q  V
Subjt:  GSLLYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV

Query:  S
        S
Subjt:  S

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.7e-5037.06Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        +DV +AFL G L ++V ++QP GFID + P +VCKL K LYGLKQA RAWY +L  YL   G+    +D +LFV     +++   +YVDDI+  G    L
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        ++N +D +   F +    E    LG++ K+    + +SQ +Y  +++ +  +  ++  +TP A   K++  +   + D   Y+ I+GSL YL   RPDI+
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV
        YA+   ++F   P   HL+ +KRI++Y+ G  + GI      T  L  Y D DW G  DD  ST     +LG++ ISW SKKQ  V
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.9e-4935.66Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL
        +DV +AFL G L +EV ++QP GF+D + P +VC+L K +YGLKQA RAWY +L  YL   G+    +D +LFV     ++I   +YVDDI+  G    L
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDL

Query:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA
        + + +D +   F +    +    LG++ K+  + + +SQ +YT +++ +  +  ++  +TP A   K+T  +   + D   Y+ I+GSL YL   RPD++
Subjt:  INNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAA---KITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIA

Query:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV
        YA+   +++   P   H   +KR+++Y+ G  D GI      T  L  Y D DW G +DD  ST     +LG++ ISW SKKQ  V
Subjt:  YAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.6e-4133.56Show/hide
Query:  MDVKSAFLNGYLNEEVCVAQPKGFI----DSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGF
        +D+ +AFLNG L+EE+ +  P G+     DS  P  VC L K +YGLKQA R W+ + ++ L   G+ +  +D T F+ I     +   +YVDDII    
Subjt:  MDVKSAFLNGYLNEEVCVAQPKGFI----DSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGF

Query:  PQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGL---EQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANR
            ++     +KS F++  +G     LGL+I + +  I I Q KY  +++ + GL   + S     P+   +  +    VD K Y+ +IG L+YL   R
Subjt:  PQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGL---EQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANR

Query:  PDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA
         DI++A+   ++F   PR +H + V +I+ YI G    G+ Y       L  + D  +    D R+ST     FLG +LISW SKKQ  VS  +A
Subjt:  PDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA

ATMG00240.1 Gag-Pol-related retrotransposon family protein8.4e-0831.08Show/hide
Query:  LYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKS
        +YLT  RPD+ +A+   ++F S  RT+ ++ V +++ Y+ G    G+ Y   +   L  + D DW    D R+S
Subjt:  LYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKS

ATMG00810.1 DNA/RNA polymerases superfamily protein3.9e-2934.33Show/hide
Query:  IYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTP-AAKITKD-TNCTIVDHKLYKSII
        +YVDDI+  G    L+N  I  + S F M  +G     LG+QIK     +F+SQ KY + I+   G+   +  STP   K+    +     D   ++SI+
Subjt:  IYVDDIIFGGFPQDLINNFIDIMKSEFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTP-AAKITKD-TNCTIVDHKLYKSII

Query:  GSLLYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV
        G+L YLT  RPDI+YA+ I  +   +P  +  +++KR+++Y+ G    G+    ++   +  +CD DW G +  R+ST     FLG N+ISW +K+Q  V
Subjt:  GSLLYLTANRPDIAYAIGICARFQSDPRTSHLEVVKRIIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCV

Query:  S
        S
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCAAGAGTGCCTTTCTGAATGGTTATTTGAACGAAGAAGTCTGTGTTGCACAACCTAAAGGATTTATTGATTCTGAATTTCCTCAGCATGTGTGTAAGCTAAA
TAAACCTCTATATGGGCTTAAGCAAGCTCTTAGAGCCTGGTACGATCAATTGACAATTTATTTGAGTTGTAAAGGATATTCCAGATGTGGGGCTGACAAGACATTATTTG
TTCACATAATGAATGATAATTTAATTGTTGCACAAATTTATGTTGATGATATCATATTTGGGGGTTTTCCTCAAGATCTTATTAATAACTTCATTGACATTATGAAATCA
GAATTTGAGATGAGTATGGTGGGAGAATTTTCTTGTCTTCTGGGCCTACAAATTAAACAGAGAAGTGAGAGTATATTCATATCTCAAGAAAAGTATACCAAGAACATAGT
TAAAAAATTTGGGTTAGAGCAGTCTCAACACAAAAGTACTCCAGCTGCAAAAATTACCAAAGATACTAATTGTACAATAGTAGATCACAAGCTCTACAAAAGCATAATCG
GAAGTCTATTATATCTAACTGCCAATCGACCTGATATTGCTTATGCTATTGGGATATGTGCTCGTTTTCAGTCTGATCCTCGTACTTCACATTTAGAAGTTGTTAAAAGA
ATCATCAAGTATATCCATGGAATAAGTGATTTTGGTATTCTGTATTTCTATGATACAACATCTATCTTGGTTGGATATTGCGATGTCGATTGGGTAGGCTCTTCTGATGA
CAGAAAAAGCACCTTTGAAGAGCGTTTCTTTCTTGGAAATAATCTTATCTCATGGCTCAGTAAGAAACAAAATTGTGTTTCCTTGTTTACTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCAAGAGTGCCTTTCTGAATGGTTATTTGAACGAAGAAGTCTGTGTTGCACAACCTAAAGGATTTATTGATTCTGAATTTCCTCAGCATGTGTGTAAGCTAAA
TAAACCTCTATATGGGCTTAAGCAAGCTCTTAGAGCCTGGTACGATCAATTGACAATTTATTTGAGTTGTAAAGGATATTCCAGATGTGGGGCTGACAAGACATTATTTG
TTCACATAATGAATGATAATTTAATTGTTGCACAAATTTATGTTGATGATATCATATTTGGGGGTTTTCCTCAAGATCTTATTAATAACTTCATTGACATTATGAAATCA
GAATTTGAGATGAGTATGGTGGGAGAATTTTCTTGTCTTCTGGGCCTACAAATTAAACAGAGAAGTGAGAGTATATTCATATCTCAAGAAAAGTATACCAAGAACATAGT
TAAAAAATTTGGGTTAGAGCAGTCTCAACACAAAAGTACTCCAGCTGCAAAAATTACCAAAGATACTAATTGTACAATAGTAGATCACAAGCTCTACAAAAGCATAATCG
GAAGTCTATTATATCTAACTGCCAATCGACCTGATATTGCTTATGCTATTGGGATATGTGCTCGTTTTCAGTCTGATCCTCGTACTTCACATTTAGAAGTTGTTAAAAGA
ATCATCAAGTATATCCATGGAATAAGTGATTTTGGTATTCTGTATTTCTATGATACAACATCTATCTTGGTTGGATATTGCGATGTCGATTGGGTAGGCTCTTCTGATGA
CAGAAAAAGCACCTTTGAAGAGCGTTTCTTTCTTGGAAATAATCTTATCTCATGGCTCAGTAAGAAACAAAATTGTGTTTCCTTGTTTACTGCATAA
Protein sequenceShow/hide protein sequence
MDVKSAFLNGYLNEEVCVAQPKGFIDSEFPQHVCKLNKPLYGLKQALRAWYDQLTIYLSCKGYSRCGADKTLFVHIMNDNLIVAQIYVDDIIFGGFPQDLINNFIDIMKS
EFEMSMVGEFSCLLGLQIKQRSESIFISQEKYTKNIVKKFGLEQSQHKSTPAAKITKDTNCTIVDHKLYKSIIGSLLYLTANRPDIAYAIGICARFQSDPRTSHLEVVKR
IIKYIHGISDFGILYFYDTTSILVGYCDVDWVGSSDDRKSTFEERFFLGNNLISWLSKKQNCVSLFTA