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Cmc04g0096751 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0096751
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Genome locationCMiso1.1chr04:11311057..11319521
RNA-Seq ExpressionCmc04g0096751
SyntenyCmc04g0096751
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK41754.1 unknown [Lotus japonicus]3.7e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

KAG7036265.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

XP_004152020.2 sm-like protein LSM5 [Cucumis sativus]1.3e-41100Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

XP_004504703.1 sm-like protein LSM5 [Cicer arietinum]4.8e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

XP_008454507.1 PREDICTED: sm-like protein LSM5 [Cucumis melo]1.3e-41100Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

TrEMBL top hitse value%identityAlignment
A0A0A0L923 U6 snRNA-associated Sm-like protein LSm56.1e-42100Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm52.3e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A1S3BZJ2 U6 snRNA-associated Sm-like protein LSm56.1e-42100Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm52.3e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

I3SNB2 U6 snRNA-associated Sm-like protein LSm51.8e-4198.85Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm57.2e-3280Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q2HJH0 U6 snRNA-associated Sm-like protein LSm57.2e-3280Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q5R628 U6 snRNA-associated Sm-like protein LSm57.2e-3280Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q9FKB0 Sm-like protein LSM56.5e-4194.12Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm57.2e-3280Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.8e-0636.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

AT3G14080.1 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL

AT3G14080.2 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL

AT4G30330.1 Small nuclear ribonucleoprotein family protein8.2e-0736.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

AT5G48870.1 Small nuclear ribonucleoprotein family protein4.6e-4294.12Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATTATGAAGGGCGACAAAGAGCTCGTTGGCACTCTCAG
AGGATTTGATGTTTATGTTAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACAGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ACATTGCTATTCTTGTTCCCGGTGGATCGCCTGACCCAGAATAG
mRNA sequenceShow/hide mRNA sequence
TTTCTTTTGCTATATATGCACGCCGCCCAACCGAAAATGGTTTCGTTTCGTTGGATGAGTCGTCGAAGGGAATTATAAGCCACGCCCTTCTTTGCTCTTTGCTGCCTTCG
CAGATTCAACTCGCAGGCCCTTTCTTCTTTCATTCTCTCTCATTCCCAGTAAAAAGCAAATTCATGGCTACCAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCG
ATGTATTGGGTCTAAAATATGGGTAATTATGAAGGGCGACAAAGAGCTCGTTGGCACTCTCAGAGGATTTGATGTTTATGTTAACATGGTTCTTGAAGATGTTACTGAAT
ATGAGATCACAGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTTGTTCCCGGTGGATCGCCTGACCCAGAATAGGCT
TGGAATATGGATAGCATGTTTTGGCCGGCAATCTTTTGCATCATTGTTATGAGTTGCCTCCTTGCACTCAACATTTACTTTATCTTTCGATATAGAATGACTCAGGTGAC
AAATTTCATGTATTTGATTGAAGTAAAGCGTTTTAGTTTCTTTGATATGAATCAGTGTTAGATTCCTTCATCTTGGCTGCTTCCGATAGAAATATGTTGGCTTAATTGTG
AAGAGAATTTGACTGTTTTCAATGGATTCACTTATTCTAACCCTAGATTTAAAACAGAAATGGAGCCGTATTGATGACCGAACGAACCCACAAAAAGTTTGGTTTGATTA
GCACTTTGATGCCTAACCAAGCAAACATTATCACGTTAAATTGTATAGTTATACTTTAAGATTTGTATTTATTTGCTTTCTATGTTTTTCAAAAGTGACTTATACGTCTT
TCAATTTTGTGTAAATTGAAAAGTTCTTGAATTTAGAATGTCTAATAGGTGT
Protein sequenceShow/hide protein sequence
MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE