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Cmc04g0096771 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0096771
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr04:11347685..11348104
RNA-Seq ExpressionCmc04g0096771
SyntenyCmc04g0096771
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-6592.75Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKST GSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLYYDNSEAVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-6491.3Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK +LKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-6492.03Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-6491.3Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK +LKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-6391.24Show/hide
Query:  VKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPNM
        VK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLN GAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPNM
Subjt:  VKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPNM

Query:  NLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        NLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  NLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

TrEMBL top hitse value%identityAlignment
A0A5A7SIN2 Gag/pol protein1.6e-6592.75Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKST GSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLYYDNSEAVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

A0A5A7TKM4 Gag/pol protein1.1e-6492.03Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

A0A5A7TZD0 Gag/pol protein1.4e-6491.3Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK +LKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

A0A5A7UYE8 Gag/pol protein1.4e-6491.3Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK +LKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPN
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        MNLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

A0A5A7V1F5 Gag/pol protein2.6e-6391.24Show/hide
Query:  VKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPNM
        VK ILKYL+RTRDYMLVYGAKDLILTGYTDS+FQ DKDSRKSTSGSVFTLN GAVVWRSIKQ CI DSTME EYVAACEA+KEAVWLRKFLHDLEVVPNM
Subjt:  VKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPNM

Query:  NLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
        NLPITLY DNS AVANSKEPRSHKRG HIERKYHLIR
Subjt:  NLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.0e-1634.04Show/hide
Query:  VKTILKYLKRTRDYMLVYG---AKDLILTGYTDSNFQPDKDSRKSTSGSVFTL-NGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEV
        +K +L+YLK T D  L++    A +  + GY DS++   +  RKST+G +F + +   + W + +Q  +  S+ E EY+A  EA +EA+WL+  L  + +
Subjt:  VKTILKYLKRTRDYMLVYG---AKDLILTGYTDSNFQPDKDSRKSTSGSVFTL-NGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEV

Query:  VPNMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
           +  PI +Y DN   ++ +  P  HKR  HI+ KYH  R
Subjt:  VPNMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

P0CV72 Secreted RxLR effector protein 1612.3e-1650.56Show/hide
Query:  AVKTILKYLKRTRDYMLVY-GAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWL
        A+K +L+YL+ T+ Y L +  A    L GY+D+++  D +SR+STSG +F LNGG V WRS KQR +  S+ EDEY+A  EA++EAVWL
Subjt:  AVKTILKYLKRTRDYMLVY-GAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-2543.48Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN
        AVK IL+YL+ T    L +G  D IL GYTD++   D D+RKS++G +FT +GGA+ W+S  Q+C+  ST E EY+AA E  KE +WL++FL +L +   
Subjt:  AVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPN

Query:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
              +Y D+  A+  SK    H R  HI+ +YH IR
Subjt:  MNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.0e-1133.09Show/hide
Query:  AVKTILKYLKRTRDY-MLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP
        A+K IL+YL  T ++ + +     L L  Y+D+++  DKD   ST+G +  L    + W S KQ+ +V S+ E EY +    S E  W+   L +L +  
Subjt:  AVKTILKYLKRTRDY-MLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP

Query:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
         +  P  +Y DN  A      P  H R  HI   YH IR
Subjt:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.3e-1132.37Show/hide
Query:  AVKTILKYLKRTRDY-MLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP
        A+K +L+YL  T D+ + +     L L  Y+D+++  D D   ST+G +  L    + W S KQ+ +V S+ E EY +    S E  W+   L +L +  
Subjt:  AVKTILKYLKRTRDY-MLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP

Query:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
         ++ P  +Y DN  A      P  H R  HI   YH IR
Subjt:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.5e-1533.81Show/hide
Query:  AVKTILKYLKRTRDYMLVYGAK-DLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP
        AV  IL Y+K T    L Y ++ ++ L  ++D++FQ  KD+R+ST+G    L    + W+S KQ+ +  S+ E EY A   A+ E +WL +F  +L++  
Subjt:  AVKTILKYLKRTRDYMLVYGAK-DLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVP

Query:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR
         ++ P  L+ DN+ A+  +     H+R  HIE   H +R
Subjt:  NMNLPITLYYDNSEAVANSKEPRSHKRGTHIERKYHLIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTAAAACTATTCTCAAGTATCTTAAGAGAACAAGAGACTACATGCTTGTTTATGGAGCAAAGGATTTGATCCTTACAGGATACACTGACTCTAATTTCCAACC
CGATAAGGATTCTAGGAAATCCACGTCGGGATCAGTGTTCACTCTGAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAAGATGCATTGTAGACTCTACTATGGAGG
ATGAATATGTCGCTGCTTGTGAAGCATCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTAT
GATAACAGTGAGGCAGTAGCCAATTCTAAAGAACCCCGCAGCCACAAACGAGGGACACATATAGAGAGGAAGTATCACCTGATACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTAAAACTATTCTCAAGTATCTTAAGAGAACAAGAGACTACATGCTTGTTTATGGAGCAAAGGATTTGATCCTTACAGGATACACTGACTCTAATTTCCAACC
CGATAAGGATTCTAGGAAATCCACGTCGGGATCAGTGTTCACTCTGAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAAGATGCATTGTAGACTCTACTATGGAGG
ATGAATATGTCGCTGCTTGTGAAGCATCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTCTATATTAT
GATAACAGTGAGGCAGTAGCCAATTCTAAAGAACCCCGCAGCCACAAACGAGGGACACATATAGAGAGGAAGTATCACCTGATACGATGA
Protein sequenceShow/hide protein sequence
MAVKTILKYLKRTRDYMLVYGAKDLILTGYTDSNFQPDKDSRKSTSGSVFTLNGGAVVWRSIKQRCIVDSTMEDEYVAACEASKEAVWLRKFLHDLEVVPNMNLPITLYY
DNSEAVANSKEPRSHKRGTHIERKYHLIR