CuGenDBv2

Gene ID	Cmc04g0096861
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:11456654..11457519
RNA-Seq Expression	Cmc04g0096861
Synteny	Cmc04g0096861
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.1e-152

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0047038.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.5e-152

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
         NQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI KIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDK+FLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

1.5e-152

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0063715.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.2e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPF+I+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.1e-152

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U7V9 Reverse transcriptase

7.0e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7V8X5 Pol protein

2.7e-152

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH V VSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE LYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

2.0e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPF+I+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VJE2 Reverse transcriptase

5.4e-153

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

Q84KB0 Pol protein

5.4e-153

98.16

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+KWAQLYMSEIVRLH VPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

5.5e-38

34.91

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++     P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

5.5e-38

34.91

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++     P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

5.5e-38

34.91

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++     P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

5.5e-38

34.91

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++     P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein

5.5e-38

34.91

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++     P  I++D D  FTS+ WK         + FS  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAATAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGAAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCTCGTTTCACTTCCAAATTCTGGA
AGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGG
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTT
GTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACCAACGAAGCGATACAGAAGATTAGAT
CACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTCGAATTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGA
GGTGTCTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTAAGATTCTAGAGCGGATTGGTCCTGTAGCTTATCGCTTGGCGTTGCCACCATC
ACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAAGATTGA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTANKWAQLYMSEIVRLHEVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMR
GVLRFERRGKLSPRFVGPFKILERIGPVAYRLALPPSLSTVHDVFHVSMLRKD

Cmc04g0096861 (gene) of Melon (Charmono) v1.1 genome