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Cmc04g0097091 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0097091
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:11874822..11875184
RNA-Seq ExpressionCmc04g0097091
SyntenyCmc04g0097091
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-5392.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKD TLRLC DY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-5392.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-5392.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-5392.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase5.6e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

A0A5A7TLU6 Reverse transcriptase2.5e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKD TLRLC DY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

A0A5A7U2V7 Reverse transcriptase5.6e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

A0A5D3BHI1 Reverse transcriptase5.6e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

A0A5D3BS67 Reverse transcriptase5.6e-5492.17Show/hide
Query:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL
        +KPEDVPVVKEFLDVFPDDLSGLPP+REIEFTIELLPGTAPISQAPY MAP+ELKELKMQLQELVDKGYIRPSVSPWGA VLFVKKKD TLRLCIDY+QL
Subjt:  MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQL

Query:  NKVTIRNKHPLPRIE
        NKVTIRNK+PLPRI+
Subjt:  NKVTIRNKHPLPRIE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.8e-1033.61Show/hide
Query:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ
        +PE   + KEF D+  + +   LP P + +EF +EL      +    Y + P +++ +  ++ + +  G IR S +     V+FV KK+ TLR+ +DYK 
Subjt:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ

Query:  LNKVTIRNKHPLPRIEGFL
        LNK    N +PLP IE  L
Subjt:  LNKVTIRNKHPLPRIEGFL

P0CT41 Transposon Tf2-12 polyprotein2.8e-1033.61Show/hide
Query:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ
        +PE   + KEF D+  + +   LP P + +EF +EL      +    Y + P +++ +  ++ + +  G IR S +     V+FV KK+ TLR+ +DYK 
Subjt:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ

Query:  LNKVTIRNKHPLPRIEGFL
        LNK    N +PLP IE  L
Subjt:  LNKVTIRNKHPLPRIEGFL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.4e-1436.94Show/hide
Query:  VVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQLNKVTIRN
        +++  L   P D++ +P    ++  IE+ PG       PY +     +E+   +Q+L+D  +I PS SP  + V+ V KKD T RLC+DY+ LNK TI +
Subjt:  VVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQLNKVTIRN

Query:  KHPLPRIEGFL
          PLPRI+  L
Subjt:  KHPLPRIEGFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.4e-1436.94Show/hide
Query:  VVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQLNKVTIRN
        +++  L   P D++ +P    ++  IE+ PG       PY +     +E+   +Q+L+D  +I PS SP  + V+ V KKD T RLC+DY+ LNK TI +
Subjt:  VVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQLNKVTIRN

Query:  KHPLPRIEGFL
          PLPRI+  L
Subjt:  KHPLPRIEGFL

Q9UR07 Transposon Tf2-11 polyprotein2.8e-1033.61Show/hide
Query:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ
        +PE   + KEF D+  + +   LP P + +EF +EL      +    Y + P +++ +  ++ + +  G IR S +     V+FV KK+ TLR+ +DYK 
Subjt:  KPEDVPVVKEFLDVFPD-DLSGLP-PNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQ

Query:  LNKVTIRNKHPLPRIEGFL
        LNK    N +PLP IE  L
Subjt:  LNKVTIRNKHPLPRIEGFL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTCTCAGGTTTGCCACCTAATAGAGAGATTGAGTTCACCATTGAATTGTTACC
AGGAACAGCACCTATTTCACAGGCACCGTATGGAATGGCTCCAAACGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGATAAGGGATACATCAGACCTAGTG
TATCGCCTTGGGGAGCACTAGTGCTATTTGTGAAAAAGAAAGATTGTACTCTCAGATTATGTATTGACTATAAACAGTTAAATAAGGTTACAATACGTAACAAGCATCCT
TTACCACGCATCGAAGGATTTTTGATCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTCTCAGGTTTGCCACCTAATAGAGAGATTGAGTTCACCATTGAATTGTTACC
AGGAACAGCACCTATTTCACAGGCACCGTATGGAATGGCTCCAAACGAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGATAAGGGATACATCAGACCTAGTG
TATCGCCTTGGGGAGCACTAGTGCTATTTGTGAAAAAGAAAGATTGTACTCTCAGATTATGTATTGACTATAAACAGTTAAATAAGGTTACAATACGTAACAAGCATCCT
TTACCACGCATCGAAGGATTTTTGATCAACTAA
Protein sequenceShow/hide protein sequence
MKPEDVPVVKEFLDVFPDDLSGLPPNREIEFTIELLPGTAPISQAPYGMAPNELKELKMQLQELVDKGYIRPSVSPWGALVLFVKKKDCTLRLCIDYKQLNKVTIRNKHP
LPRIEGFLIN