CuGenDBv2

Gene ID	Cmc04g0097181
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Coatomer, beta' subunit
Genome location	CMiso1.1chr04:12080272..12080791
RNA-Seq Expression	Cmc04g0097181
Synteny	Cmc04g0097181
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process) GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0030126 - COPI vesicle coat (cellular component) GO:0005198 - structural molecule activity (molecular function)
InterPro domains	IPR006692 - Coatomer, WD associated region

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050765.1 coatomer subunit beta'-2-like isoform X1 [Cucumis melo var. makuwa]

2.2e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

XP_004149846.1 coatomer subunit beta'-2 isoform X1 [Cucumis sativus]

2.2e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

XP_008447490.1 PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cucumis melo]

2.2e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

XP_008447491.1 PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cucumis melo]

2.2e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

XP_011651524.1 coatomer subunit beta'-2 isoform X2 [Cucumis sativus]

2.2e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8I6 Coatomer subunit beta'

1.0e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

A0A1S3BGZ7 Coatomer subunit beta'

1.0e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

A0A1S3BIG1 Coatomer subunit beta'

1.0e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

A0A5A7UAX5 Coatomer subunit beta'-2-like isoform X1

1.0e-48

99.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

A0A6J1DL37 Coatomer subunit beta'

1.5e-47

96.15

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVD+SGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        +KVN
Subjt:  SKVN

SwissProt top hits

e value

%identity

Alignment

Q5VQ78 Coatomer subunit beta'-1

4.9e-43

84.62

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL  A D SGLLLLYSSLGDA+GI +LA+ AKE GKNNVAFLCLF+LGKLEDC+QLL++SNRIPEAALMARSYLPSKVSEIVAIWR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

Q6H8D5 Coatomer subunit beta'-2

5.4e-42

78.85

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL +A+D SGLLLLYSSLGDA+G+++L ++AKEQGKNNVAFLC F+LGKLE+CLQLL+ESNRIPEAALM+RSYLPSKV EIV +W+KDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
         KVN
Subjt:  SKVN

Q8L828 Coatomer subunit beta'-3

6.8e-45

85.58

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

Q9C827 Coatomer subunit beta'-2

7.2e-47

89.42

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

Q9CAA0 Coatomer subunit beta'-1

2.4e-42

80.77

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKLDMAEEC+++A+D SGLLLLYSSLGDA G+ +LA LAKEQGKNNVAFLCLF+LG++EDCL LLVESNRIPEAALMARSYLPSKVSEIVA+WR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        +K++
Subjt:  SKVN

Arabidopsis top hits

e value

%identity

Alignment

AT1G52360.1 Coatomer, beta' subunit

5.1e-48

89.42

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

AT1G52360.2 Coatomer, beta' subunit

5.1e-48

89.42

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

AT3G15980.1 Coatomer, beta' subunit

4.8e-46

85.58

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

AT3G15980.2 Coatomer, beta' subunit

4.8e-46

85.58

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

AT3G15980.3 Coatomer, beta' subunit

4.8e-46

85.58

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL

Query:  SKVN
        SKVN
Subjt:  SKVN

Sequences

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CDS sequence

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ATGTCGATTGGAAAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACA
ACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGTAATCGGA
TTCCAGAAGCTGCTTTGATGGCTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTAGCAATTTGGAGGAAAGACCTGAGTAAGGTAAACTAG

mRNA sequence

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Protein sequence

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MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVN

Cmc04g0097181 (gene) of Melon (Charmono) v1.1 genome